Discover mdekauwe/g1_leaf_canopy_ecosystem Open Source project

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Created about 8 years ago
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mdekauwe

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Repository containing all the code to reproduce the results in Medlyn et al. (2017) How do leaf and ecosystem measures of water-use efficiency compare? New Phytologist, in press.

GDAY

GDAY simulates carbon, nitrogen & water dynamics

FitFarquharModel

Fitting routine for the Farquhar model parameters to a series of measured A-Ci curve data (see README below)

Python

pygday

GDAY simulates carbon, nitrogen & water dynamics on a daily time step.

Python

bayesian-football

Replication of 'Bayesian hierarchical model for the prediction of football results' using pymc

Maestra

MAESTRA is a model of forest canopy radiation absorption and photosynthesis. See website, these are some minor changes I have made to the codebase.

Fortran

stochastic_antecedent_modelling

R/pymc3 implementations of Ogle's stochastic antecedent modelling (SAM) framework example from their 2015 paper

Lomb_Scargle

Lomb-Scargle periodogram method of estimating a frequency spectrum from unevenly spaced data based on a least squares fit of sinusoids to data samples.

get_modis_lai_lat_lon

Python

weather_generator

Python

BEES3041_lab_photosynthesis

BEES3041: Modelling the photosynthetic response to environmental conditions

Jupyter Notebook

big_leaf_vs_two_leaf

Python

FLUXNET2015_data

FLUXNET 2015 data, with various scripts to clean things up

Python

pydesica

Plant hydraulic model

Python

CLIM3001_lab_photosynthesis

CLIM3001: Modelling the photosynthetic response to environmental conditions

Jupyter Notebook

Coupled_Canopy

Python

mauna_loa_co2_GP

Predict CO2 obs using Gaussian process regression

Python

CABLE_scripts

Various CABLE scripts - a moving target

Python

flux_decoupling

Repository containing all the code to reproduce the results in De Kauwe et al. (2017) Biogeosciences, accepted.

Python

soil_drainage

Check I have the Richards' equation working

Python

dalec_EnKF

Python

coupled_A_gs_leaf_temp_transp

Iteratively solve leaf temperature, Ci, gs, An and transpiration

Python

Drought_analysis

Python

Beerling_Woodward_paleo_book

co2_x_drought_figure

two_leaf_at_WTC

JULES_scripts

CRU_TS_v4_MAT_MAP_AI

Calculatte MAT, MAP and an aridity index from CRU 0.5 degree data.

Python

decoupling_fluxnet2015

Python

GIMMS_LAI3g

Python

SE_AUS_drought_risk_paper

Python

swiss_mortality

Python

mdekauwe/g1_leaf_canopy_ecosystem

mdekauwe

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