marcel-goldschen-ohm/single-molecule-imaging-toolbox

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2
Language
MATLAB
License
MIT License
Created about 5 years ago
Updated about 3 years ago

marcel-goldschen-ohm/single-molecule-imaging-toolbox

marcel-goldschen-ohm

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A collection of MATLAB tools for single-molecule image analysis.

PyQtImageViewer

PyQt image viewer widget with mouse zooming and panning.

EigenLab

C++ utility for parsing/evaluating matrix math equations input at run time in a format similar to MATLAB (requires Eigen for matrix math).

QtPropertyEditor

UI property editors for a QObject or a QObjectList.

QtPropertySerializer

Serialization of QObject property tree <==> QVariantMap <==> {Json, XML, ...}

ModelViewPyQt

A collection of PyQt model/view interfaces.

QtOpenGLViewer

Simple 3D or 2D OpenGL viewer with mouse rotation, pan, zoom and some object selection.

NEU-337-Spring-2020

Programing and Data Analysis for Modern Neuroscience - Spring 2020

Jupyter Notebook

NEU-365P-385L-Spring-2021

Jupyter Notebook

QtFont3D

3D font renderer based on QFont, OpenGL and GLU.

NEU-365P-385L-Spring-2022

Programming and Data Analysis for Modern Neuroscience, Spring 2022

Jupyter Notebook

NEU-365P-385L-Spring-2023

Programming and Data Analysis for Modern Neuroscience

Jupyter Notebook

MultiPageTIFFViewerPyQt

PyQt TIFF image stack viewer widget with mouse zoom/pan and frame slider.

NEU-Spring-2019

Programming and Data Analysis for Modern Neuroscience Spring 2019

Jupyter Notebook

smBEVO

Computer vision approach to intuitive baseline drift estimation for single-molecule data series.

xarray-graph

PyQt/PySide UI for graphing (x,y) slices of Xarray datasets.

pyqt-ext

Collection of PyQt/PySide widgets/tools.

zarr-view

PySide or PyQt tree model-view for a Zarr hierarchy

napari-cosmos-ts

napari plugin for colocalization single-molecule spectroscopy (CoSMoS) time series (TS)

xarray-treeview

PyQt/PySide model/view for tree of Xarray datasets.