There are no reviews yet. Be the first to send feedback to the community and the maintainers!
pagoda2
R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasetsconos
R package for the joint analysis of multiple single-cell RNA-seq datasetsnumbat
Haplotype-aware CNV analysis from single-cell RNA-seqBaysor
Bayesian Segmentation of Spatial Transcriptomics DatadropEst
Pipeline for initial analysis of droplet-based single-cell RNA-seq datacacoa
Single-cell Case Control AnalysisscITD
Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decompositionvrnmf
Volume-regularized NMFhahmmr
Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seqsccore
Core utilities for single-cell RNA-seqN2R
R extensions to N2 implementing approximate nearest neighbor search methodsleidenAlg
Implements the Leiden algorithm via an R interfaceNumbatAnalysis
Analysis scripts and notebooks for Numbat papergpsFISH
Optimization of gene panels for targeted spatial transcriptomicscap-example
An example of proposed CAP annotation viewBaysorAnalysis
Analysis for the Baysor paperscistreer
R/Rcpp implementation of the ScisTree algorithmdropestr
Preprocessing of Droplet-based Single-Cell RNA-seq Datacap-pipeline-config
Building ontology pipeline configurations for the Cell Annotation PlatformAllenBrain_AnnData
Instructions on how to convert Allen Brain Atlas data into AnnData filescacoaAnalysis
Analysis for the Cacoa paperconosViz
Shiny App to Visualize Dendrograms and Heatmaps from ConosscLiTr
Repository for the scLiTr (single-cell Lineage Tracing analysis) python packageconosPanel
Package with data used by conos: panel of four samples with 3000 cells eachdrat
Drat repo with R packagesp2data
Package with data used by pagoda2, 3000 bone marrow cellscap-pipeline-dumps
simulatedNMF
Package with data used by vrnmf, simulated NMF matricescap_organ_slim
Love Open Source and this site? Check out how you can help us