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imagej2
Open scientific N-dimensional image processing 🔬 🎇ImageJ
Public domain software for processing and analyzing scientific imagespyimagej
Use ImageJ from Pythontutorials
ImageJ2 programming examplesimagej-ops
ImageJ Ops: "Write once, run anywhere" image processingImageJA
[OBSOLETE] Please use https://github.com/imagej/ImageJ instead.imagej-server
A RESTful web server for ImageJ [EXPERIMENTAL]example-legacy-plugin
Simple Maven project for an ImageJ 1.x pluginexample-imagej2-command
Simple Maven project for an ImageJ2 commandimagej-tensorflow
ImageJ/TensorFlow integration librarynapari-imagej
Use ImageJ functionality from napariimagej.github.io
The ImageJ wikiimagej-scripting
ImageJ-specific applications of the SciJava script languagesimagej-launcher
The ImageJ native launcherops-experiments
EXPERIMENTAL repository for exploring Ops approaches, algorithms, etc.imagej-legacy
ImageJ+ImageJ2 compatibility layerimagej-matlab
MATLAB integration with ImageJ data structures and runtime.i2k-2020-pyimagej
Workshop materials for "Images to Knowledge with ImageJ and Friends" 2020 conferencei2k-2018
Workshop materials for "Images to Knowledge with ImageJ and Friends" 2018 conferenceimagej-updater
The automatic updater for ImageJimagej-omero
Server- and client-side communication between ImageJ and OMEROi2k-2022-pyimagej
Workshop materials for "I2K 2022: From Images to Knowledge" conferenceimagej-ui-swing
ImageJ UI for Java Swing.example-script-collection
Example project demonstrating how to package ImageJ scripts into a single jar fileimagej-electron-app
[EXPERIMENTAL] Electron app embedding ImageJ + JS image visualization toolsimagej-common
ImageJ core data modelimagej-itk
ITK integration for ImageJimagej-node
ImageJ module for node.jsenvisaje
Envisaje: A NetBeans RCP application prototype for ImageJ [UNMAINTAINED]imagej-modelzoo
list-of-update-sites
The update sites ImageJ2 knows about automaticallyexample-imagej2-command-kotlin
An ImageJ command that mixes Kotlin and Java codeij1-patcher
Extension points for ImageJ via runtime patching to support (limited) headless operation and ImageJ2's legacy layerimagej-mesh
Data structures and I/O for meshesij1-tests
Unit tests for ImageJ 1.xworkflow
A library to facilitate efficient chaining of modules and plugins with various inputs and outputs [UNMAINTAINED]ij1-installer
OBSOLETEimagej-maven-plugin
[OBSOLETE] All goals migrated to scijava/scijava-maven-pluginimagej-notebook
Routines for working with ImageJ from scientific notebook software (e.g. Jupyter)imagej-plugins-batch
Batch Processor Plugins for ImageJimagejdocu
Migration repository for imagejdocu.list.luimagej-troubleshooting
Interactive toy repository to demonstrate troubleshooting techniques.imagej-plugins-commands
Core ImageJ commandsimagej2-manuscript-2017
ImageJ2: ImageJ for the next generation of scientific image datapresentations
ImageJ presentationspom-imagej
OBSOLETE - Use https://github.com/scijava/pom-scijava instead!imagej-command-archetype
Maven archetype for a SciJava/ImageJ2 Commandexample-android-app
[EXPERIMENTAL] An example using ImageJ in an Android projectexample-bio-formats-legacy-plugin
Simple example of calling Bio-Formats with ImageJ 1.x + Java 6workflow-pipes
Web-based workflow editor using Yahoo! Pipes [UNMAINTAINED]visad-plugin
A plugin for displaying ImageJ images using VisAD in a freeform way [UNMAINTAINED]mbf
Mirror of the MBF ImageJ manualimagej-updater-tests
Docker-based test infrastructure for ImageJ Updaterimagej-opencv
Convert between OpenCV and ImgLib2 data structuresdotfiles
Configuration files for ImageJ resourcesimagej-plugins-search-biii
ImageJ Search Plugin for BIII.euimagej-onnx
imagej-mesh-io
I/O plugins for ImageJ meshes and related data structureschocolatey-packages
tickets
Archived static HTML version of legacy ImageJ Trac ticketsimagej-ui-awt
ImageJ UI for Java AWT.imagej-deprecated
Deprecated ImageJ packagesimagej-benchmarks
JMH-based benchmarks for projects of https://github.com/imagej/.zoomviewer
A multi-level, tile-based zoomable viewer [UNMAINTAINED]janelia-hackathon-2016
Hacking at Janelia Research Campus, June 19 - 27, 2016op-finder
Utility for browsing, learning about and running all available Opsimagej-wiki-static
Final version of MediaWiki imagej.netimagej-omero-legacy
ImageJ 1.x support for ImageJ-OMEROpipermail
Retired ImageJ2 mailing list archivessearch
ImageJ search portalconference
ImageJ conference materials.github
ImageJ organization profileimagej-plugins-uploader-ssh
Core ImageJ uploader plugin: SSHij1-builds
[OBSOLETE] Please use https://github.com/imagej/ImageJ instead.imagej-usage
[ABANDONED] Anonymous usage statistics plugin for ImageJimagej-plugins-uploader-webdav
Core ImageJ uploader plugin: WebDAVworkshops
ImageJ Workshopspyimagej-dextr
Where I'm working on integrating pytorch and imagej (via pyimagej). This repo is experimental.irc-bot
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