Discover hussius/publicRNAseqdata Open Source project

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Code for the paper "Assessing the consistency of public human tissue RNA-seq data sets" (Danielsson at al, Briefings in Bioinformatics 2015, 16 (6): 941-949)

deeplearning-biology

A list of deep learning implementations in biology

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tabnet_fork

A fork of TabNet by Google Research

Python

ascii-autoencoder

TensorFlow autoencoder implementation with ASCII visualization of reconstruction progress

Python

bigpicture-twitterdiscourse

Companion repository to blog post "The big picture of public discourse" where we analyze Swedish Twitter data from 2015

Python

TCGA_proteomics_tutorial

Tutorial on working with TCGA mass-spec proteomics (and RNA-seq) data.

Jupyter Notebook

valdata

Analysis of voting patterns in the Swedish general election 2014.

HTML

shiny-imageclassif-tfslim

Shiny version of code in blog post https://www.r-bloggers.com/image-classification-in-r-using-trained-tensorflow-models/

scilife-utilities

Helper scripts for NGS data processing

Python

scanBAM

Script that searches a set of BAM files for RNA-seq alignments that match a provided set of peptide coordinates.

Python

lstm_sandbox

Testing LSTM architectures with Valohai

Python

meetup-lime-examples

Notebooks with examples of using LIME on tabular, text and image data, presented at Machine Learning Stockholm 2017-09-27

Jupyter Notebook

swedish-school-fires

Data on Swedish school fire cases 1998-2014

hussius/publicRNAseqdata

hussius

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