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IntegratedGradients
Python/Keras implementation of integrated gradients presented in "Axiomatic Attribution for Deep Networks" for explaining any model defined in Keras framework.DeepAccNet
Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.DeepATACseq
Repository for the code for DeepATAC project presented at WCB workshop in ICML2017DLmodels
Personal experiments and implementation examples of deep learning papers.DeepAccNet-TF
Python/TF1 implementation of DeepAccNet (https://www.biorxiv.org/content/10.1101/2020.07.17.209643v1)ATAC_peak
Deep learning framework to predict TF binding from DNA-sequence and ATAC-seq signals.LocalAccuracyPredictor
Tensorflow/Python implementation of local accuracy predictor for proteinsBackpropDemonstration
Demonstration of back-propagation for the undergrad ML class that I TAed [Archived]PyProtein
An easy interface to extract data from pdbs using the rosetta frameworkjlVCF
A simple VCF file parser for Julia 3.0GraphConv
Implementation of graph convolution layersChipSeqUtil.jl
Utility files for analyzing ChIP-Seq data.jlBAM
A simple bam file reader for Julia 5.0BackboneEstimator.py
Estimates backbone quality based on C beta (or C alpha) distance maps.AminoAcids2BackboneAngles
Sample deep-learning notebooks for presentation given at BakerLab @ UWLove Open Source and this site? Check out how you can help us