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IntegratedGradients
Python/Keras implementation of integrated gradients presented in "Axiomatic Attribution for Deep Networks" for explaining any model defined in Keras framework.DeepAccNet
Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.DeepATACseq
Repository for the code for DeepATAC project presented at WCB workshop in ICML2017IntegratedGradientsTF
Tensorflow implementation of integrated gradients presented in "Axiomatic Attribution for Deep Networks". It explains connections between two tensors.DLmodels
Personal experiments and implementation examples of deep learning papers.DeepAccNet-TF
Python/TF1 implementation of DeepAccNet (https://www.biorxiv.org/content/10.1101/2020.07.17.209643v1)ATAC_peak
Deep learning framework to predict TF binding from DNA-sequence and ATAC-seq signals.LocalAccuracyPredictor
Tensorflow/Python implementation of local accuracy predictor for proteinsBackpropDemonstration
Demonstration of back-propagation for the undergrad ML class that I TAed [Archived]PyProtein
An easy interface to extract data from pdbs using the rosetta frameworkjlVCF
A simple VCF file parser for Julia 3.0GraphConv
Implementation of graph convolution layersBackboneEstimator.py
Estimates backbone quality based on C beta (or C alpha) distance maps.ChipSeqUtil.jl
Utility files for analyzing ChIP-Seq data.jlBAM
A simple bam file reader for Julia 5.0Love Open Source and this site? Check out how you can help us