fiji/IJ_Robot

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Rank 3,963,521 (Top 79 %)
Language
Java
Created over 10 years ago
Updated over 2 years ago

fiji/IJ_Robot

fiji

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This plugin calls the Robot Java class. The purpose of the plugin is to allow the macro language to control other programs via clicking and key presses.

fiji

A "batteries-included" distribution of ImageJ 🔋

Trainable_Segmentation

Fiji library to perform image segmentation based on the Weka learning schemes

Stitching

Fiji's Stitching plugins reconstruct big images from tiled input images.

Auto_Threshold

fiji.github.io

AnalyzeSkeleton

ImageJ/Fiji plugin to analyze 2D and 3D skeleton images

Colocalisation_Analysis

Fiji's plugin for colocalization analysis

cookbook

Plugins collated for the Fiji Cookbook

SPIM_Registration

Deprecated, instead check out: https://github.com/preibischLab/multiview-reconstruction & https://github.com/PreibischLab/BigStitcher

bUnwarpJ

ImageJ/Fiji plugin for consistent elastic registration of 2D images

3D_Viewer

register_virtual_stack_slices

Fiji package for registering and transforming arbitrarily large sequences of images

microscope-image-quality

TensorFlow-based classifier for microscope image focus quality.

Skeletonize3D

ImageJ/Fiji plugin to skeletonize binary images

javac

VIB

Fiji_Plugins

SNT

Legacy project superseded by https://github.com/morphonets/SNT

Jama

OBSOLETE; see http://central.maven.org/maven2/gov/nist/math/jama/1.0.3/

HDF5_Vibez

HDF5 plugin for ImageJ and Fiji.

Graph_Cut

dockerfiles

Fiji Dockerfiles for Docker builds.

Kappa

A Fiji plugin for Curvature Analysis

Jupyter Notebook

IO

FilamentDetector

A Fiji plugin that allows easy, fast and accurate detection and tracking of biological filaments.

LocalThickness

Directionality

A Fiji plugin for inferring the main orientation of structures in an image.

fiji-builds

Downloadable Fiji bundles

Correct_3D_Drift

VIB-lib

Descriptor_based_registration

level_sets

FlowJ

Plugins from Biomedical Imaging in Java (BIJ)

OMEVisual

A Fiji plugin to easily visualize OME metadata.

Siox_Segmentation

Fiji plugin based on the SIOX project to segment color images

MTrack2

Colour_Deconvolution

pom-fiji

OBSOLETE - Use https://github.com/scijava/pom-scijava instead!

pQCT

Fiji plugins for pQCT image analysis.

CorrectBleach

H5J_Loader_Plugin

H5J Reader Plugin for Fiji project.

KymographBuilder

KymographBuilder is Yet Another Kymograph Fiji plugin.

simplified-io

Read, write, type convert images using simple methods.

BalloonSegmentation

Image_5D

A plugin to extend image stacks to 5 dimensions: x, y, channel (color), slice (z), frame (t).

Volume_Calculator

Cell_Counter

Dichromacy

fiji-compat

[OBSOLETE] Merged with fiji/fiji

Kuwahara_Filter

Auto_Local_Threshold

Vaa3d_Reader

SplineDeformationGenerator

3D_Blob_Segmentation

View5D

3D_Objects_Counter

learnathon-2019

Collection of material for the 2019 Learnathon

panorama

Feature_Detection

JMathLib

Mirror of JMathLib project

Stochastic_Denoise

Color_Histogram

Interactive_3D_Surface_Plot

Series_Labeler

LSM_Reader

PIV_analyser

Color_Inspector_3D

ToAST

Multi_Kymograph

Statistical_Region_Merging

Manual_Tracking

Time_Lapse

A set of tools intended to help with time-lapse data

Volume_Viewer

Stack_Manipulation

legacy-imglib1

OBSOLETE; see https://github.com/imglib/imglib2

Threshold_Colour

OBSOLETE; included with https://github.com/imagej/imagej1

QuickPALM

Time_Stamper

fiji-lib

weave_jy2java

A framework for inlining java code in an otherwise interpreted programming language running on the JVM, such as jython. See https://github.com/fiji/fiji/issues/161

FS_Align_TrakEM2

registration_3d

Lasso_and_Blow_Tool