fasrc/Intro_to_Odyssey_exercises

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Created about 9 years ago
Updated about 9 years ago

fasrc/Intro_to_Odyssey_exercises

fasrc

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User_Codes

Jupyter Notebook

slurmmon

gather and plot data about Slurm scheduling and job statistics

slurm_showq

A modification to the slurm_showq code written by TACC.

helmod

Harvard Extensions for Lmod deployment

sas2ircu

RPM spec file for sas2ircu: LSI Corporation SAS2 IR (Integrated RAID) Configuration Utility

slurm-diamond-collector

A collection of diamond collectors for slurm.

best_slurm_partition

Find Best SLURM Partition to Run a Job

scalc

Script for doing Slurm Calculations

corona

COntaineRized OpenNebulA

pcull

kill or renice processes that are overusing resources

virtio-win

fas-ondemand-rstudio

interactive application to run Rstudio on Ondemand

lsf_utils

LSF scripts, including bjobs2 -- bjobs plus additional output formatting and acct parsing

hpc-hadoop-mapreduce

run hadoop mapreduce jobs in an HPC environment

lsload

Node Load Script for Slurm

Intro_to_Odyssey_MATLAB_workflows

Intro to Odyssey with MATLAB integration materials

stdg

Slurm Test Deck Generator

spart

A simplified output of Slurm partition information.

Integrating_R_Workflows

rse

Github Repository of Research Software Engineering Community at Harvard

iobsub

Wrapper to place io heavy jobs in an openlava cluster directly on to the storage systems needed.

nagios-plugins-check_sas2ircu

Nagios plugin for sas2ircu: LSI Corporation SAS2 IR Configuration Utility

nebula-ceph-diamond-collector

Diamond collectors for OpenNebula VM disks on Ceph

module-usage

Store usage of (environment) modules in a database

rtcli

cli scripts for using Request Tracker

prometheus-slurm-exporter

Prometheus Exporter for Slurm

onedns

Dynamic DNS for OpenNebula

one-vm-bootstrap

OpenNebula init script for bootstrapping a VM from a git repo

showq

showq emulates the functionality of PBS.torque's showq for LSF

puppet-shiny

R Shiny config via puppet

slurm_migration_scripts

Making filesystem migrations easy with the power of slurm.

DataFest

Jupyter Notebook

easybuild_fasrc

Harvard EasyBuild Repository

mdoc

fscull

distributed filesystem data retention policy enforcement

hinoki

A python API wrapper and CI/CD scaffold for Sensu Go

ceph_rsnapshot

Ceph RBD backup to qcow via rsnapshot

puppet-starfish

Install and configure Starfish storage management (http://www.starfishstorage.com)

rshiny_pro_centos

R Shiny Pro with CentOS base

fas-ondemand-jupyter-app

deploy jupyter app on the FAS academic cluster via OpenOnDemand

Introduction_to_Odyssey

Intro to Odyssey materials for SEAS CS205 class

nebula_rbd_metadata

Sync OpenNebula template variables to RBD metadata

puppet-slurm_stats

Prints some user Slurm stats on login.

fas-ondemand-jupyter-apps

jupyter apps customized for different courses for fas-ondemand

api

Code that operates on fasrc APIs

R_computational_workflow

sftocf

A Coldfront plugin for pulling usage data from Starfish.

phylobayes

A Bayesian Monte Carlo Markov Chain (MCMC) sampler for phylogenetic reconstruction and molecular dating.