fasrc/Integrating_R_Workflows

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Created about 9 years ago
Updated almost 9 years ago

fasrc/Integrating_R_Workflows

fasrc

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User_Codes

Jupyter Notebook

slurmmon

gather and plot data about Slurm scheduling and job statistics

slurm_showq

A modification to the slurm_showq code written by TACC.

helmod

Harvard Extensions for Lmod deployment

sas2ircu

RPM spec file for sas2ircu: LSI Corporation SAS2 IR (Integrated RAID) Configuration Utility

slurm-diamond-collector

A collection of diamond collectors for slurm.

best_slurm_partition

Find Best SLURM Partition to Run a Job

scalc

Script for doing Slurm Calculations

corona

COntaineRized OpenNebulA

pcull

kill or renice processes that are overusing resources

virtio-win

fas-ondemand-rstudio

interactive application to run Rstudio on Ondemand

lsf_utils

LSF scripts, including bjobs2 -- bjobs plus additional output formatting and acct parsing

hpc-hadoop-mapreduce

run hadoop mapreduce jobs in an HPC environment

lsload

Node Load Script for Slurm

Intro_to_Odyssey_MATLAB_workflows

Intro to Odyssey with MATLAB integration materials

stdg

Slurm Test Deck Generator

spart

A simplified output of Slurm partition information.

rse

Github Repository of Research Software Engineering Community at Harvard

iobsub

Wrapper to place io heavy jobs in an openlava cluster directly on to the storage systems needed.

nagios-plugins-check_sas2ircu

Nagios plugin for sas2ircu: LSI Corporation SAS2 IR Configuration Utility

nebula-ceph-diamond-collector

Diamond collectors for OpenNebula VM disks on Ceph

module-usage

Store usage of (environment) modules in a database

rtcli

cli scripts for using Request Tracker

prometheus-slurm-exporter

Prometheus Exporter for Slurm

onedns

Dynamic DNS for OpenNebula

one-vm-bootstrap

OpenNebula init script for bootstrapping a VM from a git repo

showq

showq emulates the functionality of PBS.torque's showq for LSF

puppet-shiny

R Shiny config via puppet

slurm_migration_scripts

Making filesystem migrations easy with the power of slurm.

DataFest

Jupyter Notebook

easybuild_fasrc

Harvard EasyBuild Repository

Intro_to_Odyssey_exercises

mdoc

fscull

distributed filesystem data retention policy enforcement

hinoki

A python API wrapper and CI/CD scaffold for Sensu Go

ceph_rsnapshot

Ceph RBD backup to qcow via rsnapshot

puppet-starfish

Install and configure Starfish storage management (http://www.starfishstorage.com)

rshiny_pro_centos

R Shiny Pro with CentOS base

fas-ondemand-jupyter-app

deploy jupyter app on the FAS academic cluster via OpenOnDemand

Introduction_to_Odyssey

Intro to Odyssey materials for SEAS CS205 class

nebula_rbd_metadata

Sync OpenNebula template variables to RBD metadata

puppet-slurm_stats

Prints some user Slurm stats on login.

fas-ondemand-jupyter-apps

jupyter apps customized for different courses for fas-ondemand

api

Code that operates on fasrc APIs

R_computational_workflow

sftocf

A Coldfront plugin for pulling usage data from Starfish.

phylobayes

A Bayesian Monte Carlo Markov Chain (MCMC) sampler for phylogenetic reconstruction and molecular dating.