davetang/reproducible_bioinformatics

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R
Created about 5 years ago
Updated over 2 years ago

davetang/reproducible_bioinformatics

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Workshop material for BioC Asia 2019

learning_vcf_file

Learning the Variant Call Format

learning_bam_file

Learning the Sequence Alignment/Map format

learning_docker

Learning about Docker.

machine_learning

Machine learning in R

defining_genomic_regions

Define regions in the genome

sars_cov_2

Bioinformatics analysis of SARS-CoV-2

romim

R package for querying the OMIM database

learning_random_forest

Notes and code for learning Random Forests

cv

My curriculum vitae

getting_started_with_c

Learning how to code in C

learning_python

My repository for learning Python

Jupyter Notebook

human_phenotype_ontology

Resources for working with the Human Phenotype Ontology

importbio

getting_started_with_latex

Getting started with LaTeX

research_parasite

How research parasites can download your data!

bioinformatics_tips

learning_r

learning_bash

rnaseq

RNA-seq analyses.

tang_sd_2015

getting_started_with_git

learning_quarto

Quarto is a multi-language, next-generation version of R Markdown from Posit

archs4_heatmap

Gene heatmap using ARCHS4

cookiemonster

Cookiecutter templates

22722852

Site-specific DICER and DROSHA RNA products control the DNA-damage response

learning_singularity

Learning about Singularity (the container platform and not the technological singularity)

onemanarmy

Sometimes you just need to know everything, whether you like it or not

22976001

Analysis for the paper "piRNAs warrant investigation in Rett Syndrome: an omics perspective"

learning_rust

multimapping

Investigate the multimapping behaviour of sequence aligners

learning_vim