csbl-usp/MetaVolcanoR

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R
Created about 6 years ago
Updated over 1 year ago

csbl-usp/MetaVolcanoR

csbl-usp

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Gene expression meta-analysis visualization tool

CEMiTool

Co-Expression Module Identification Tool (CEMiTool) official repository

OpenTargets_drug_repositioning

The scripts in this repository perform the following tasks necessary for drug repositioning using Open Targets:

NIPT

fcoex

The fcoex package implements an easy-to use interface to co-expression analysis based on the FCBF (Fast Correlation-Based Filter) algorithm. it was implemented especifically to deal with single-cell data. The modules found can be used to redefine cell populations, unrevel novel gene associations and predict gene function by guilt-by-association. The package structure is based on the CEMiTool package.

csbl_chikungunya_edgeR

mdp

PubScore

R package for calculating the literature score for a given gene / gene list in relation to the biomedical literature.

pipelines

Bioinformatics pipelines

covid19_model

Shiny App for decision making based on this blogpost (https://medium.com/@tomaspueyo/coronavirus-act-today-or-people-will-die-f4d3d9cd99ca)

csbltools

This package is intended to unify the most commonly used functions in the CSBL.

networgly

Fast network visualization with WebGL

reannotator-microarray-probes