• Stars
    star
    119
  • Rank 291,855 (Top 6 %)
  • Language
    Python
  • License
    MIT License
  • Created over 9 years ago
  • Updated about 2 months ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Python toolbox for analyzing imaging data

Package versioning (Auto-On-Push/PR) Formatting, Tests, and Coverage codecov Codacy Badge DOI Python Versions Platforms

NLTools

Python toolbox for analyzing neuroimaging data. It is particularly useful for conducting multivariate analyses. It is originally based on Tor Wager's object oriented matlab canlab core tools and relies heavily on nilearn and scikit learn. Nltools is only compatible with Python 3.7+.

Documentation

Documentation and tutorials are available at https://nltools.org

Installation

  1. Method 1 (stable)

    pip install nltools
    
  2. Method 2 (bleeding edge)

    pip install git+https://github.com/cosanlab/nltools
    
  3. Method 3 (for development)

    git clone https://github.com/cosanlab/nltools
    pip install -e nltools
    

Preprocessing

Nltools has minimal routines for pre-processing data. For more complete pre-processing pipelines please see our cosanlab_preproc library built with nipype.

More Repositories

1

py-feat

Facial Expression Analysis Toolbox
Python
230
star
2

cosanlab_preproc

Nipype-based data fMRI pre-processing tools
Jupyter Notebook
14
star
3

neighbors

A package to perform collaborative filtering on emotion datasets.
Python
10
star
4

affectiva-api-app

Extract emotion features using Affectiva's javascript API
JavaScript
8
star
5

vmPFC_dynamics

This repository contains the code to run the analyses from our paper on vmPFC dynamics.
Jupyter Notebook
8
star
6

PGG_meteor

Public goods game with meteor
JavaScript
7
star
7

affective_ISRSA

Data and code for Chen et al., 2020, Neuroimage paper
Jupyter Notebook
4
star
8

naturalistic_iEEG_func_align

This is the repo for the codes used in paper "Minimal functional alignment of ventromedial prefrontal cortex intracranial EEG signals during naturalistic viewing"
Jupyter Notebook
3
star
9

moth_app

JavaScript
2
star
10

emote

Toolbox for training CNN to predict emotion expressions. Developed by Dan Whitcomb.
Python
2
star
11

svelte-psiturk

HTML
2
star
12

fnl_tools

tools to analyze video data set
Python
2
star
13

pymedoc

Python
1
star
14

trust-game

Interactive 2-player trust game demo
Svelte
1
star
15

rating_wheel

Repository for developing javascript rating wheel
HTML
1
star
16

info-theory-book

Jupyter Notebook
1
star
17

cosanToolsSingularity

HPC friendly Python + Neuroimaging analysis container environment
1
star
18

MothSvelte

Svelte
1
star
19

headcase

Data and code accompanying the following manuscript:
Jupyter Notebook
1
star
20

cosanToolsDocker

Python + Neuroimaging analysis container environment
1
star
21

trust-game-analysis

Python
1
star
22

FNL_dyad

Jupyter Notebook
1
star
23

Pinel_localizer

Psychopy port of pinel functional localizer for fMRI
Python
1
star
24

reward_signature

This repository contains all of the code for the reward signature paper.
Jupyter Notebook
1
star