bcbio/test_bcbio_cwl

Stars
7
Rank 2,294,772 (Top 46 %)
Language Common Workflow Language
License
MIT License
Created almost 8 years ago
Updated almost 6 years ago

bcbio/test_bcbio_cwl

bcbio

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Test workflows, run scripts and data for bcbio Common Workflow Language integration

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bcbio-nextgen-vm

Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines

bcbio_validations

Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses

bcbio.variation.recall

Parallel merging, squaring off and ensemble calling for genomic variants

bcbio_validation_workflows

A community menagarie of automated variant validations using bcbio and the Common Workflow Language

Common Workflow Language

bcbio.github.io

Blue Collar Bioinformatics website

bcbio_docker

Automated Docker builds for bcbio

icr142-validation

Preparation scripts and bcbio integration for the ICR142 NGS validation series

bcbio-utils

Helper scripts for bcbio-nextgen

bcbioR

R package with well defined templates for most common pipelines

bcbio-dnanexus-wrapper

Repository to hold wrapper apps for bcbio CWL on DNAnexus

bcbio_rnaseq_output_example

example of bcbio RNAseq output to test bcbioRnaseq R package

hivdrm

Detect HIV Drug Resitant Mutations using amplicon sequencing data