bcbio/bcbio_validation_workflows

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20
Rank 1,121,974 (Top 23 %)
Language Common Workflow Language
License
MIT License
Created over 7 years ago
Updated about 3 years ago

bcbio/bcbio_validation_workflows

bcbio

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A community menagarie of automated variant validations using bcbio and the Common Workflow Language

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bcbio-nextgen-vm

Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines

bcbio_validations

Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses

bcbio.variation.recall

Parallel merging, squaring off and ensemble calling for genomic variants

bcbio.github.io

Blue Collar Bioinformatics website

bcbio_docker

Automated Docker builds for bcbio

test_bcbio_cwl

Test workflows, run scripts and data for bcbio Common Workflow Language integration

Common Workflow Language

icr142-validation

Preparation scripts and bcbio integration for the ICR142 NGS validation series

bcbio-utils

Helper scripts for bcbio-nextgen

bcbioR

R package with well defined templates for most common pipelines

bcbio-dnanexus-wrapper

Repository to hold wrapper apps for bcbio CWL on DNAnexus

bcbio_rnaseq_output_example

example of bcbio RNAseq output to test bcbioRnaseq R package

hivdrm

Detect HIV Drug Resitant Mutations using amplicon sequencing data