Discover almaan/Cluster-VAE Open Source project

Stars
4
Rank 3,304,323 (Top 66 %)
Language
Python
Created over 5 years ago
Updated over 5 years ago

almaan

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Clustering of Single Cell or ST-data using a Variational Autoencoder for dimensionality reduction followed by a Dirichlet Process based unsupervised clustering

stereoscope

Spatial mapping of cell types by integration of transcriptomics data

Python

her2st

Her2 Breast Cancer Project

eggplant

diceconverter

genetech

ST-mLiver

Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the liver

Jupyter Notebook

growmeatissue

Synthethic data generation

Python

sepal

sepal : Spatial Expression PAttern Locator

Python

CellTracker

Implementation of the Gaussian Mixture Particle Hypothesis Density (GM-PHD) filter for cell tracking in brightfield images

Jupyter Notebook

space2h5ad

Automatic conversion of spacerange output to h5ad format

Python

ST_subtype_classification

subtype classification of breast cancer based on ST-data, using markov random fields and neural networks.

Python

spacetx

scripts related to work with spacetx

Jupyter Notebook

star-repair

Python

almaan.github.io

HTML

breast_dge

Breast Cancer Differential Gene Expression Analysis Project

almaan/Cluster-VAE

almaan

Reviews

Repository Details

More Repositories