Discover @almaan Open Source projects

Alma Andersson (@almaan)

almaan

Stars
195
Global Rank 125,690 (Top 5 %)
Followers 78
Following 3
Registered about 10 years ago
Most used languages

Python
50.0 %

Jupyter Notebook
31.3 %

HTML
6.3 %

R
6.3 %

JavaScript
6.3 %
Location 🇺🇸 United States
Country Total Rank 29,649
Country Ranking

Jupyter Notebook
1,814

Python
7,693

stereoscope

Spatial mapping of cell types by integration of transcriptomics data

her2st

Her2 Breast Cancer Project

Jupyter Notebook

eggplant

Jupyter Notebook

diceconverter

genetech

material related to the genetech courses

ST-mLiver

Code associated with the manuscript Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the liver

Jupyter Notebook

growmeatissue

Synthethic data generation

sepal

sepal : Spatial Expression PAttern Locator

CellTracker

Implementation of the Gaussian Mixture Particle Hypothesis Density (GM-PHD) filter for cell tracking in brightfield images

Jupyter Notebook

Cluster-VAE

Clustering of Single Cell or ST-data using a Variational Autoencoder for dimensionality reduction followed by a Dirichlet Process based unsupervised clustering

space2h5ad

Automatic conversion of spacerange output to h5ad format

ST_subtype_classification

subtype classification of breast cancer based on ST-data, using markov random fields and neural networks.

spacetx

scripts related to work with spacetx

Jupyter Notebook

star-repair

almaan.github.io

breast_dge

Breast Cancer Differential Gene Expression Analysis Project