akaraw/MHC_complex_annotation_of_swans

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akaraw/MHC_complex_annotation_of_swans

akaraw

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This pipeline describes on how to annotate MHC class I and II genes in both mute swan and black swan

swan_genome_annotation

maker3 annotation for swan genomes using the transcriptomic evidence, homology evidence and de novo prediction

Gene_family_evolution_in_swans

The gene family evolution in swans with OrthoFinder/CAFE5

Synteny-analysis-with-progressiveCactus-and-Mummer

This pipeline describes the method of multiple avian genome analysis and synteny analysis

running_dorado

Black_swan_genome_assembly

This repository contains the scripts used for black swan (Cygnus atratus) genome assembly using PacBio long reads sequence data. The black swan gneome was constructed as a part of a project investigating genesis and pathogenesis of highly pathogenic avian influenza in Australian black swans. The study was conducted at the University of Queensland, St. Lucia, Queensland, 4027.