ZJUFanLab/scCube

Stars
4
Rank 3,222,182 (Top 65 %)
Language
Jupyter Notebook
License
GNU General Publi...
Created about 1 year ago
Updated 3 months ago

ZJUFanLab/scCube

ZJUFanLab

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT data

scCATCH

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

bulk2space

a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles

Jupyter Notebook

scDeepSort

Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network

SpaTalk

Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data

CellTalkDB

A manually curated database of literature-supported ligand-receptor interactions in human and mouse

scSpace

an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial transcriptome references

scCATCH_performance_comparison

The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and CHETAH, and CellMatch database

scDeepSort_performance_comparison

The source code and results for different methods on annotating external testing datsets of human and mouse.

scRank

A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gene regulatory network (tpGRN) for single-cell transcriptomic data

CCL-cGPS

A clinical genomics-guided prioritizing strategy enables accurately selecting proper cancer cell lines for biomedical research

SpaTrio

SCOTCH

SCOTCH is a Single-Cell multi-modal integration method leveraging the Optimal Transport algorithm and a cell matCHing strategy

Jupyter Notebook

scDeepTalk

Infer cell-cell communications based on feed-forward neural network

scTITANS

Identifying key genes and cell subclusters for time-series single cell sequencing data

scDisProcema

SAMBA