Discover Slicer/teem Open Source project by @Slicer

⚠️ OBSOLETE | Multi-platform, free open source software for visualization and image computing.

1,637

SlicerGitSVNArchive

Extension for 3D Slicer that allows the application to be used from Jupyter notebook

871

SlicerJupyter

Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python

238

SlicerNotebooks

Jupyter Notebook

ExtensionsIndex

Slicer extensions index

Build, package, test, and run 3D Slicer and Slicer Extensions in Docker.

SlicerDocker

Dockerfile

SlicerExecutionModel

An open-source CMake-based project that provides macros and associated tools for the easy building of 3D Slicer command line interface (CLI) modules.

General-purpose features that may be integrated into VTK library in the future.

vtkAddon

Slicer Extension wrapping OpenCV

SlicerOpenCV

3D Slicer extension for creating, editing, and storing translations for Slicer core and extensions

SlicerLanguagePacks

A repository of scripts to set up a Slicer build environment.

SlicerBuildEnvironment

Dockerfile

SlicerDeveloperToolsForExtensions

Set of tools to help developers when creating new Slicer extensions

Skull stripping for structural MR images of the brain, tested on T1 and T2 contrast.

SkullStripper

An interactive registration tool that manages viewing and manipulating of sets of fiducials

LandmarkRegistration

⚠️ OBSOLETE | Slicer Command Line Module. Given some initial points in polydata will construct a contour and evolve it to high mean-curvature areas, returning the interior region indices.

Slicer-MeshContourSegmentation

Supports various cleanup and optimization processes on surface models

SlicerSurfaceToolbox

Collection of scripts used to configure/build/test/package 3D Slicer and associated extensions

DashboardScripts

A simple GitHub post-receive web hook handler able to trigger a CircleCI build.

github-circleci-trigger

⚠️ OBSOLETE | Legacy Slicer module - Provides affine registration using multiple resolution levels and decomposed affine transforms

Slicer-MultiResolutionAffineRegistration

Slicer Testing Data Mirror

SlicerTestingData

⚠️ OBSOLETE | Legacy Slicer module - Registers two images together using BSpline transform and mutual information

Slicer-BSplineDeformableRegistration

3D Slicer extension to enable simulations using the SOFA framework

SlicerSOFA

An open-source library for serialization and deserialization of Insight Segmentation and Registration Toolkit (ITK) classes.

ParameterSerializer

Introduction to Python scripting and module development for 3D Slicer

SlicerProgrammingTutorial

SlicerNeuro

Extension for 3D Slicer than installs tools commonly needed for neuroimaging.

⚠️ OBSOLETE | Legacy Slicer module - Registers two images together using an affine transform and mutual information.

Slicer-AffineRegistration

Python package that contains tools for internationalization of applications that use Python and Qt

sliceri18n

This project is a snapshot of the data historically served from slicer.kitware.com/midas3

slicer.kitware.com-midas3-archive

preview.apidocs.slicer.org

This project hosts and serves a preview version of Slicer API documentation

Shell

CurveMaker

Simple 3D Slicer module to generate a spline curve from a list of fiducials

⚠️ OBSOLETE | Legacy Slicer module - Registers two images together using a rigid transform and mutual information

Slicer-RigidRegistration

DISCONTINUED - Use http://github.com/commontk/qRestAPI

qMidasAPI

Repository to track tasks and store resources related to internationalization (i18n) of 3D Slicer.

Slicer-i18n

leapmotion-python-distributions

CMake project for building LeapMotion Python 3 modules

⚠️ OBSOLETE | Editor extension for using the 'RobustStatSegmenter' CLI module.

Slicer-RobustStatisticsSegmenter

Binary dependencies required to build Slicer

SlicerBinaryDependencies

apidocs.slicer.org

This project hosts and serves the Slicer API documentation

Shell

jqplot

⚠️ OBSOLETE | Fork of jqplot from https://bitbucket.org/cleonello/jqplot to support patches for Slicer4

JavaScript

SlicerRegistrationLibrary

Library of registration cases including step-by-step instructions and discussions

Attic

⚠️ OBSOLETE | This is where abandoned classes and deprecated code related to Slicer may be archived

This project organizes Slicer sample data, atlases and registration case library images.

SlicerDataStore

Repository to store source and localized language translation files for 3D Slicer and its extensions

SlicerLanguageTranslations

Slicer-OpenSSL

OpenSSL sources and builds used in Slicer-based projects.

DISCONTINUED - See https://github.com/openigtlink/OpenIGTLinkIF - OpenIGTLink IF module manages communications between 3D Slicer and other OpenIGTLink-compliant software through the network.

OpenIGTLinkIF

Legacy Slicer module - This filter creates a binary thresholded image that separates an image into foreground and background components

Slicer-OtsuThresholdImageFilter