Slicer/SlicerDocker

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Created almost 9 years ago
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Slicer/SlicerDocker

Slicer

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Build, package, test, and run 3D Slicer and Slicer Extensions in Docker.

Slicer

Multi-platform, free open source software for visualization and image computing.

SlicerGitSVNArchive

⚠️ OBSOLETE | Multi-platform, free open source software for visualization and image computing.

SlicerJupyter

Extension for 3D Slicer that allows the application to be used from Jupyter notebook

SlicerNotebooks

Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python

Jupyter Notebook

ExtensionsIndex

Slicer extensions index

SlicerExecutionModel

An open-source CMake-based project that provides macros and associated tools for the easy building of 3D Slicer command line interface (CLI) modules.

vtkAddon

General-purpose features that may be integrated into VTK library in the future.

SlicerOpenCV

Slicer Extension wrapping OpenCV

SlicerLanguagePacks

3D Slicer extension for creating, editing, and storing translations for Slicer core and extensions

SlicerBuildEnvironment

A repository of scripts to set up a Slicer build environment.

SlicerDeveloperToolsForExtensions

Set of tools to help developers when creating new Slicer extensions

SkullStripper

Skull stripping for structural MR images of the brain, tested on T1 and T2 contrast.

LandmarkRegistration

An interactive registration tool that manages viewing and manipulating of sets of fiducials

Slicer-MeshContourSegmentation

⚠️ OBSOLETE | Slicer Command Line Module. Given some initial points in polydata will construct a contour and evolve it to high mean-curvature areas, returning the interior region indices.

SlicerSurfaceToolbox

Supports various cleanup and optimization processes on surface models

DashboardScripts

Collection of scripts used to configure/build/test/package 3D Slicer and associated extensions

github-circleci-trigger

A simple GitHub post-receive web hook handler able to trigger a CircleCI build.

Slicer-MultiResolutionAffineRegistration

⚠️ OBSOLETE | Legacy Slicer module - Provides affine registration using multiple resolution levels and decomposed affine transforms

SlicerTestingData

Slicer Testing Data Mirror

Slicer-BSplineDeformableRegistration

⚠️ OBSOLETE | Legacy Slicer module - Registers two images together using BSpline transform and mutual information

SlicerSOFA

3D Slicer extension to enable simulations using the SOFA framework

ParameterSerializer

An open-source library for serialization and deserialization of Insight Segmentation and Registration Toolkit (ITK) classes.

teem

Slicer fork of teem library - Official repository is hosted on SVN: https://svn.code.sf.net/p/teem/code/teem/trunk

SlicerProgrammingTutorial

Introduction to Python scripting and module development for 3D Slicer

SlicerNeuro

Extension for 3D Slicer than installs tools commonly needed for neuroimaging.

Slicer-AffineRegistration

⚠️ OBSOLETE | Legacy Slicer module - Registers two images together using an affine transform and mutual information.

sliceri18n

Python package that contains tools for internationalization of applications that use Python and Qt

slicer.kitware.com-midas3-archive

This project is a snapshot of the data historically served from slicer.kitware.com/midas3

preview.apidocs.slicer.org

This project hosts and serves a preview version of Slicer API documentation

CurveMaker

Simple 3D Slicer module to generate a spline curve from a list of fiducials

Slicer-RigidRegistration

⚠️ OBSOLETE | Legacy Slicer module - Registers two images together using a rigid transform and mutual information

qMidasAPI

DISCONTINUED - Use http://github.com/commontk/qRestAPI

Slicer-i18n

Repository to track tasks and store resources related to internationalization (i18n) of 3D Slicer.

leapmotion-python-distributions

CMake project for building LeapMotion Python 3 modules

Slicer-RobustStatisticsSegmenter

⚠️ OBSOLETE | Editor extension for using the 'RobustStatSegmenter' CLI module.

SlicerBinaryDependencies

Binary dependencies required to build Slicer

apidocs.slicer.org

This project hosts and serves the Slicer API documentation

jqplot

⚠️ OBSOLETE | Fork of jqplot from https://bitbucket.org/cleonello/jqplot to support patches for Slicer4

SlicerRegistrationLibrary

Library of registration cases including step-by-step instructions and discussions

Attic

⚠️ OBSOLETE | This is where abandoned classes and deprecated code related to Slicer may be archived

SlicerDataStore

This project organizes Slicer sample data, atlases and registration case library images.

SlicerLanguageTranslations

Repository to store source and localized language translation files for 3D Slicer and its extensions

Slicer-OpenSSL

OpenSSL sources and builds used in Slicer-based projects.

OpenIGTLinkIF

DISCONTINUED - See https://github.com/openigtlink/OpenIGTLinkIF - OpenIGTLink IF module manages communications between 3D Slicer and other OpenIGTLink-compliant software through the network.

Slicer-OtsuThresholdImageFilter

Legacy Slicer module - This filter creates a binary thresholded image that separates an image into foreground and background components