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synapsePythonClient
Programmatic interface to Synapse services for PythonBridge-iOS-SDK
Synapse-Repository-Services
The Synapse Repository Services project is the home of the JSON REST web services for Synapse.CMSclassifier
synapser
An R package providing programmatic access to SynapserSynapseClient
The R programmatic interface to Synapse servicesSynapseWebClient
The web client of the Synapse REST service coreschematic
Package for biomedical data model and metadata ingress managementsage-monorepo
Where OpenChallenges, Schematic, and other Sage open source apps are builtPCC-Toolkit
Participant-Centered Consent (PCC) Toolkit - exploring a visual approach to assisting the โinformednessโ part of informed consent for clinical studies.mhealthtools
A modular R package for extracting features from mobile sensor dataMoleMapper
mhealthx
mhealthx is a software pipeline that automates feature extraction from mobile health data saved as a Synapse project (synapse.org).crcsc
CRC Subtyping ConsortiumsynapseAnnotations
Sage Bionetworks derived standards for annotating content in Synapse.BridgePF
DEPRECATED in favor of BridgeServer2Genie
Validation and processing of GENIE filesdata_curator
Data and metadata ingress appdccvalidator
Metadata Validation for Data Coordinating Centersaws-infra
Global Sage Bionetworks AWS InfrastructurerHDF5
Access HDF5 files from R. Based on a package originally authored by Roy Kuraisa, Wilson Lau and Jason Eglin at Merck & Co. that was donated to Sage Bionetworks.mPower-sdata
scripts used for preparation of Nature Scientific Data submission and release of mPower datametanetwork
metanetworkTumor-Deconvolution-Challenge-Workflow
BridgeAppSDK
SDK for creating ResearchKit-based Bridge apps for iOSSynapse-React-Client
To help quickly integrate your React app with the Synapse API backendCardiorespiratoryFitness-iOS
Stand-alone task modules for measuring cardiorespiratory fitnesssyndccutils
code for managing data coordinating operations through SynapseAgora
synapseDocs
Synapse documentation pagesdatabase-semaphore
PDBiomarkerChallenge
PDScores
url-signer
A simple Java Utility for Signing URLsampad-DiffExp
Code base for performing covariate adjustments and differential expression analysis of the RNAseq data from AMP-AD.BridgeServer2
Bridge Server 2.0 running on Spring BootrSynapseClientRewrite
The design of the R Synapse client is getting crusty and difficult to maintain. Let's overhaul it!Synapse-Stack-Builder
Project for building a complete Synapse Stackpolypharmacology-db
This app enables exploration of the Drug-Target Explorer database.synapseformation
Client for using Synapse Formation templates.mPower-2-Android
Parkinson's disease clinical study appCMSSupport
Drop-in Bridge-compatible CMS encryption implementation for use with AppCore.synapse-web-monorepo
Monorepo for Synapse Web projectsAMPAD_Lineage
Ordering patients on smooth manifolds using lineage estimation toolsGENIE-Sponsored-Projects
This repository contains processing code for GENIE sponsored projects used for creating cBioPortal filesdashboard
synAnnotationUtils
AMPAD
R package with code for AMPAD consortia manuscriptknit2synapse
Functionality to knit RMarkdown documents to Synapse wiki pages.AMP-AD_Network_Analysis
location of analysis scripts for AMP-AD network working groupchallengeutils
Synapse challenge utility functionsSynapseWorkflowHook
Code for linking a workflow engine to a Synapse evaluation queueGlioblastoma-Exploration
Scouring the Glioblastoma (GBM) TCGA expression data for molecular signatures indicative of survival benefitrare-disease-workflows
Workflows for processing rare disease data on Synapse.dermalNF
Code designed to annotate and process CTF-funded dermal NF samples. All available data and key analysis steps uploaded to http://www.synapse.org/dermalNFmPower-2-iOS
Source code for the iOS version of the mPower 2 study app.SynapseShinyApp
Basic structure of a R Shiny application for use on Synapsechallengerutils
Synapse R challenge utility functions. (wraps challengeutils)mpowertools
feature extraction toolkit for mPower modulesportals
React component based configurations that generate community portals built on top of SynapseSynapseWorkflowOrchestrator
BridgeDownstream
Glue pipeline to export Bridge data as Parquet and CSV to SynapseAssessmentModelKMM
cross-platform architecture for serializing and displaying assessments run on mobile devices and used in scientific researchdeveloper-handbook
sagethemes
Sage-branded plot themess3-synapse-sync
prov-service
lightweight implementation of the Synapse Activity services, based on the PROV specmPowerRerun
sageseqr
A workflow for exploring and analyzing RNA-seq data.nvml-statsd
This Python project integrates the NVIDIA management library with statsd to report GPU metrics to a monitoring toolawesome-synapse
List of repositories here that utilizes the Synapse clientsdigitalHealth_RetentionAnalysis_PublicRelease
Analysis code for "Indicators of retention in remote digital health studies: A cross-study evaluation of 100,000 participants"minidream-r-env
Resources for setting up and managing an RStudio environment for interactive mini-DREAM activitiesmPower-Android
mPower for AndroidBridgeClientKMM
A Kotlin Multiplatform Mobile Bridge clientmPowerSDK
Shared framework for ResearchKit app studying Parkinson's disease, developed by Sage Bionetworks and University of Rochester.kubernetes-deployments
Kubernetes deployments on ibc EKS clusterNF_LandscapePaper_2019
This repository hosts all the code used to generate analyses and figures for the landscape papersynapserutils
R package for Synapse utilitiesbridge-analytics-template
Repository for streamlining Bridge Data ETLsynapsemonitor
Enable monitoring of updates or newly created entities in Synapseschema-to-pojo
The schema-to-pojo project was started because we wanted to programmatically generate the Plain Old Java Objects (POJOs) from JSON schemas. More specifically we wanted to use the generated POJOs as resources of the Synapse JSON REST web services API. Since we are using the POJOs as REST resources we also wanted an easy way to marsh instances to/from JSON. Lastly, we also wanted to use the generated POJOs in our Google Web Toolkit (GWT) client-side code and server side code. Thus the schema-to-pojo project was born. Learn more at the folllowing wiki:nfhackathon2020
Hack for NF - NF Hackathon 2020covidrecoverycorps
challengescoring
This R package provides scoring mechanisms for computational challenges and implements the bayesBootLadderBoot approach for avoiding test data leakage.stopadforms
synapsegenie
This package can deploy a AACR GENIE like project on Synapse and perform validation and processing of files.STM-metaAnalysis-clearScience
agoradataprocessing
sage-workflows-sandbox
In-progress and example CWL tools/workflowsjccli
A jumpcloud command line interface applicationCRFValidationApp-iOS
Application for validating CRF mobile health modules for the iPhone.shiny-module-gallery
mHealthIdentityConfounding
CommonCompute
Common compute resources for Sage data scientistscsbc-pson-dcc
Data coordination resources for the NCI CSBC and PS-ON consortiaEvidenceAggregatedDriverRanking
Ranking methodology of potential Driver genes using multi-view feature setssessionTools
Store, load and teleport R sessions.magora
metadata-automation-challenge
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