RagnarGrootKoerkamp/bam2seq RagnarGrootKoerkamp/bam2seq

  • Stars
    star
    1
  • Language
    Rust
  • Created about 2 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
RagnarGrootKoerkamp/bam2seq
github

RagnarGrootKoerkamp

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Converts a BAM file to reads and reconstructed references using the CIGAR and MD tag.

More Repositories

1

astar-pairwise-aligner

A pairwise sequence aligner written in Rust
Rust
113
star
2

BAPCtools

Tools for developing ICPC-style programming contest problems.
Python
49
star
3

PTRHash

PTRHash minimal perfect hash function, based of PTHash
Rust
32
star
4

1brc

Rust
32
star
5

minimizers

Reference implementations of minimizer schemes to go with the mod-minimizers paper.
Rust
22
star
6

rust-phylogeny

Rust package for constructing and analyzing phylogenies.
Rust
13
star
7

alg-viz

String algorithm visualizations
Rust
13
star
8

oxford-bioinformatics-template

Improved version of the Oxford Bioinformatics paper template
TeX
11
star
9

research

Blog on PhD @ BMI ETH Zurich
TeX
8
star
10

suffix-array-searching

High throughput suffix array searching
Rust
6
star
11

bfs-aligner

A quick demo of extension-aligning Fasta reads to GFA files for unit-costs using BFS and greedy matching
Rust
4
star
12

sshash-rs

Rust rewrite of SSHash
Rust
3
star
13

author-plot

Plot correlation between authors of papers
TeX
3
star
14

just-shell

Tiny shell for invoking `just` rules.
Rust
2
star
15

hanabi

Rust
2
star