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fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)awesome-bio-datasets
awesome-bio-datasetsAfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataMutScan
Detect and visualize target mutations by scanning FastQ files directlyrepaq
A fast lossless FASTQ compressor with ultra-high compression ratioGeneFuse
Gene fusion detection and visualizationgencore
Generate duplex/single consensus reads to reduce sequencing noises and remove duplicationsfastv
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.scrnapip
A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing AnalysisOpenGene.jl
(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in JuliaCfdnaPattern
Pattern Recognition for Cell-free DNAUniqueKMER
Generate unique KMERs for every contig in a FASTA filectdna-pipeline
A simplified pipeline for ctDNA sequencing data analysisdefq
Please switch to https://github.com/OpenGene/defastqMrBam
Query Mutated Reads from a BamFusionDirect.jl
(No maintenance) Detect gene fusion directly from raw fastq filesSeqMaker.jl
(No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrateddedup
Deduplication for cfDNA sequencing datadefastq
Ultra-fast Multi-threaded FASTQ Demultiplexingpecheck
check paired-end FASTQ data integrityslicer
Slice a text file (like FastQ) to smaller files by lines, with gzip supportedACMSI
The shiny-based app for Fragment Analysis, especially for MSI analysisnovelbio-bioinfo
novelbio-base
IRDProc
Process genomic data downloaded from influenza research database for unique k-mer generatingLove Open Source and this site? Check out how you can help us