JuliaHealth/OMOPCDMPathways.jl

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License
MIT License
Created 11 months ago
Updated 4 months ago

JuliaHealth/OMOPCDMPathways.jl

JuliaHealth

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Finding pathways of interest within OMOPCDM data

KomaMRI.jl

Koma is a Pulseq-compatible framework to efficiently simulate Magnetic Resonance Imaging (MRI) acquisitions. The main focus of this package is to simulate general scenarios that could arise in pulse sequence development.

DICOM.jl

Julia package for reading and writing DICOM (Digital Imaging and Communications in Medicine) files

PubChemCrawler.jl

Utilities to programmatically query the PubChem database

ICD_GEMs.jl

ICD_GEMs.jl is a Julia package that allows to translate ICD-9 codes in ICD-10 and viceversa via the General Equivalence Mappings (GEMs) of the International Classification of Diseases (ICD).

BioMedQuery.jl

Julia utilities for interacting with biomedical databases and biomedical application programming interfaces (APIs)

juliahealth.github.io

Website for the JuliaHealth organization (powered by Franklin.jl).

ARules.jl

Julia package for association rule learning

FHIRClient.jl

Julia client for connecting to FHIR (Fast Healthcare Interoperability Resources) servers and building SMART on FHIR applications

MedEye3d.jl

Julia library for visualization and annotation medical images, specialized particularly for rapid development segmentation of 3 dimensional images like CT or PET/CT scans. Has full support of nuclear medicine Data.

OMOPCDMCohortCreator.jl

Create cohorts from databases utilizing the OMOP CDM

PubMedMiner.jl

Julia package for studying co-occurrences in PubMed articles

Jupyter Notebook

MedPipe3DTutorial

Jupyter Notebook

CTakesParser.jl

Julia package to parse the output of Apache cTAKES (clinical text analysis and knowledge extraction system)

DICOMTree.jl

A small Julia tool for visualizing DICOM metadata.

HealthBase.jl

Common namespace for functions and interfaces in the JuliaHealth ecosystem

OMOPCommonDataModel.jl

Pure Julia implementation of the OMOP Common Data Model (CDM)

PharmaceuticalClassification.jl

Mappings between different systems for classifying medications

OMOPCDMPredictor

Patient Level Prediction for OMOP CDM Databases

MedPipe3D.jl

NeuroAnalyzer.jl

Julia toolbox for analyzing neurophysiological data

MedEval3D.jl

Set of CUDA accelerated medical segmentation metrics.

CAOS.jl

Julia implementation of the characteristic attribute organization system (CAOS) algorithm

HealthSampleData.jl

Sample health data for a variety of health formats and use cases

SMARTAppLaunch.jl

Implementation of the SMART App Launch Framework for building SMART on FHIR applications

OHDSIAPI.jl

A Julia interface to a variety of OHDSI web or API-based services

EpiJ

Helper library for routine EPIdemiological procedures written in Julia.

JuliaHealthBlog

The JuliaHealth Blog -- powered by Documenter.jl, made with love.

MedImages.jl

ObservationalHealthSubecosystemPaper

IPUMS.jl

A convenience package to work with IPUMS data

HealthMLBase.jl

OMOPCDMMetrics

Operations to generate metrics taking advantage of the OMOP CDM standard

CloToP.jl

Clozapine Toxicity Predictor

OMOPCDMDatabaseConnector.jl

Utility package to connect to databases in the OMOP CDM format

DICOMClient.jl

Julia client for connecting to DICOM (Digital Imaging and Communications in Medicine) servers by using the DICOMweb RESTful services

DiagnosisClassification.jl

Mappings between different systems for classifying diagnoses and problems

OMOPVocabMapper.jl

JuliaHealthLLM

Prototype JuliaHealth LLM project