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Clair3
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant callingClair
Clair: Exploring the limit of using deep neural network on pileup data for germline variant callingClairS
ClairS - a deep-learning method for long-read somatic small variant callingClairS-TO
ClairS-TO - a deep-learning method for tumor-only somatic variant callingSENSV
A tool to detect structural variantMegaGTA
HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphsClair3-Trio
Clair3-Trio: variant calling in trio using Nanopore long-readsMegaPath-Nano
MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics; MegaPath-Nano-Amplicon: filtering module for metagenomic amplicon dataClair3-RNA
Clair3-RNA - a long-read small variant caller for RNA sequencing dataCONNET
CONNET: Accurate Genome Consensus in Assembling Nanopore Sequencing Data via Deep LearningCPG
Building a Chinese pan-genome of 486 individualsClusterV
ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing dataClairvoyante-PyTroch
Pytorch version of ClairvoyanteChromSeg
A framework for crossing-overlap chromosome segmentationClair3-Nova
de novo variant calling in trio using Nanopore long-readsECNano
A target captured medical exome ONT sequencing with amplicon variant calling workflowMegaPath
MegaPath: sensitive and rapid pathogen detection using metagenomic NGS data; MegaPath-Amplicon: filtering module for metagenomic amplicon dataONT-TB-NF
Comprehensive pipeline for detection of TB from ONT adaptive sequencing and amplicon data.Clair3-MP
variant calling using with sequencing data from multiple platformsGovernome
Governome - Towards a new standard in genomic data privacy: a realization of owner-governanceUNCALLED
Raw nanopore signal mapper that enables real-time targeted sequencingClusterV-Web
TC-RENO
A tool to detect full length isoforms of RNACellContrast
CellContrast: Reconstructing Spatial Relationships in Single-Cell RNA Sequencing Data via Deep Contrastive LearningAF-NS
Chromatin-Fiber-Imaging
Chromatin Fiber Imagingmegabox
A web platform for hosting up-to-date MEGAHIT assemblies of publicly available but challenging metagenome sequence data.Love Open Source and this site? Check out how you can help us