Daniel-Liu-c0deb0t/triple_accel

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100
Rank 340,703 (Top 7 %)
Language
Rust
License
MIT License
Created over 4 years ago
Updated over 1 year ago

Daniel-Liu-c0deb0t/triple_accel

Daniel-Liu-c0deb0t

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Rust edit distance routines accelerated using SIMD. Supports fast Hamming, Levenshtein, restricted Damerau-Levenshtein, etc. distance calculations and string search.

uwu

fastest text uwuifier in the west

Java-Machine-Learning

Deep learning library for Java, with fully connected, convolutional, and recurrent layers. Also features many gradient descent optimization algorithms.

block-aligner

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

Jupyter Notebook

cute-nucleotides

Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.

UMICollapse

Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.

Adversarial-point-perturbations-on-3D-objects

New distributional and shape attacks on neural networks that process 3D point cloud data.

3D-Neural-Network-Adversarial-Attacks

Research on adversarial attacks and defenses for deep neural network 3D point cloud classifiers like PointNet and PointNet++.

ANTISEQUENCE

Rust library for processing sequencing reads.

simple-saca

Hardware go brrr bounded context suffix array construction algorithm

dlb-kmer-sampling

Optimal distance lower bound k-mer sampling.

9S

Basic Rust program that uses multiple threads to send and receive pings.

spliced-aligner

Spliced aligner.

Java-Fuzzy-Search

A general, multi-threaded fuzzy searching language, called fuzzysplit, that is built on top of a fast and flexible Java fuzzy search library. Can be applied to demultiplex and trim DNA.

diff-align

Differentiable position-specific probability matrix alignment.

General-Algorithms

A variety of algorithm implementations and short classes, mostly for competitive programming and machine learning.

replit_audio

Rust library for playing audio in repl.it.

WWDC-2020-Coronavirus-Comparison

Efficiently comparing the 2019 coronavirus genome with a couple of other coronaviruses in Swift.

rust-cloc

Count lines from files in a directory.

frfr

Parallelized Ukkonen/Myer's edit distance algorithm, fr fr.

diff-bench-paper

Edits to the supplementary data of the difference recurrence alignment paper.

simulate-seqs

Simulate sequences.

reCall

Interpreter for reCall, a dynamically typed scripting language that emphasizes recursion. Also contains object-oriented and functional features.

Maze-Solver

2D grid-based maze solver that is written in Java. Uses Swing for GUI and contains 8 different methods for solving mazes.