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uwu
fastest text uwuifier in the westJava-Machine-Learning
Deep learning library for Java, with fully connected, convolutional, and recurrent layers. Also features many gradient descent optimization algorithms.block-aligner
SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.cute-nucleotides
Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.triple_accel
Rust edit distance routines accelerated using SIMD. Supports fast Hamming, Levenshtein, restricted Damerau-Levenshtein, etc. distance calculations and string search.UMICollapse
Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.Adversarial-point-perturbations-on-3D-objects
New distributional and shape attacks on neural networks that process 3D point cloud data.ANTISEQUENCE
Rust library for processing sequencing reads.simple-saca
Hardware go brrr bounded context suffix array construction algorithmdlb-kmer-sampling
Optimal distance lower bound k-mer sampling.9S
Basic Rust program that uses multiple threads to send and receive pings.spliced-aligner
Spliced aligner.Java-Fuzzy-Search
A general, multi-threaded fuzzy searching language, called fuzzysplit, that is built on top of a fast and flexible Java fuzzy search library. Can be applied to demultiplex and trim DNA.diff-align
Differentiable position-specific probability matrix alignment.General-Algorithms
A variety of algorithm implementations and short classes, mostly for competitive programming and machine learning.replit_audio
Rust library for playing audio in repl.it.WWDC-2020-Coronavirus-Comparison
Efficiently comparing the 2019 coronavirus genome with a couple of other coronaviruses in Swift.rust-cloc
Count lines from files in a directory.frfr
Parallelized Ukkonen/Myer's edit distance algorithm, fr fr.diff-bench-paper
Edits to the supplementary data of the difference recurrence alignment paper.simulate-seqs
Simulate sequences.reCall
Interpreter for reCall, a dynamically typed scripting language that emphasizes recursion. Also contains object-oriented and functional features.Maze-Solver
2D grid-based maze solver that is written in Java. Uses Swing for GUI and contains 8 different methods for solving mazes.Love Open Source and this site? Check out how you can help us