DKFZ-ODCF/odcf-guide

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Created about 1 year ago
Updated 10 months ago

DKFZ-ODCF/odcf-guide

DKFZ-ODCF

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ACEseqWorkflow

Allele-specific copy number estimation with whole genome sequencing

DKFZBiasFilter

AlignmentAndQCWorkflows

The DKFZ alignment workflow plugin originally developed at the eilslabs

SNVCallingWorkflow

The DKFZ-ODCF, formerly DKFZ/eilslabs SNV-Calling Workflow

RNAseqWorkflow

Roddy RNA-seq Workflow Plugin

IndelCallingWorkflow

A Platypus-based workflow for indel calling

SophiaWorkflow

A Roddy plugin to run the Sophia tool.

ldap-summary

Simple shellscripts to make interaction with LDAP/AD/ldapsearch easier

nf-bam2fastq

Nextflow-based BAM-to-FASTQ conversion and FASTQ-sorting workflow.

methylCtools-fingerprint

Fingerprinting code originally part of the the methylCtools of Volker Hovestadt.

sophia

The Sophia structural variation caller. Fork of https://bitbucket.org/utoprak/sophia.

COWorkflowsBasePlugin

A basic Roddy plugin for computational oncology workflows

ega-xml-dl

batch download everything in your EGA or ENA submission account

igv-crawler

Crawl any filesystem for genome data, providing one-click opening in IGV

ega-cluster-cryptor

parallelise encryption of EGA submissions onto a cluster - a partial EgaCryptor replacement

FastqIndEx

A tool to index and extract data from gzipped FASTQ files