VIB Bioinformatics Core (@vibbits)

Top repositories

1

phyd3

Phylogenetic tree viewer based on D3.js
JavaScript
55
star
2

training-material

VIB BITS training material
JavaScript
8
star
3

sc_read_kallisto_wrapper

wrapper for single cell transcriptomics pipeline with kallisto
HTML
7
star
4

nis2pyr

Python utility and library for converting Nikon .nd2 files to pyramidal OME TIFF.
Python
7
star
5

EMDenoising

Java
6
star
6

gentle-hands-on-python

Course materials for the 'Gentle hands-on introduction to Python programming'.
Jupyter Notebook
6
star
7

example-bioinformatics-project

Compare and contrast available tools for bioinformatics projects
HTML
5
star
8

containers-workflow-hackathon

This is a draft repository for organizing and collecting materials for the containers & workflows course.
5
star
9

nextflow-workshop

Nextflow workshop materials March 2023
HTML
5
star
10

rocker_conda_data_integration

Docker container based on rocker/tidyverse with miniconda3 to run various integration tools for Omics
R
5
star
11

introduction-github

This is a test-repository for the GitHub tutorial.
HTML
4
star
12

nextflow-jnj

Course materials for the workflow pipelines (Nextflow) course.
Nextflow
3
star
13

phylio

Read, write, and manipulate phylogenetic trees
PureScript
3
star
14

rust-node-ci

A docker image optimized for building Rust and Node projects in CI.
Dockerfile
3
star
15

Elixir-3DBioInfo-Benchmark-Protein-Interfaces

3
star
16

snpeffect

snpeffect pipeline
Perl
3
star
17

vib-css

VIB CSS styling
SCSS
2
star
18

rnaseq-editing

nf-core based pipeline for prediction of editing events with RDDpred
Nextflow
2
star
19

material-liascript

PostScript
2
star
20

irdata

iRefIndex data processing library
Python
1
star
21

phyd3-parser-compat

A compatability library implementing PhyloXML parsing from the legacy version of PhyD3.
JavaScript
1
star
22

mec-shiny-apps

R
1
star
23

nc-shiny-apps

R
1
star
24

CAMEL

The CAMEL platform, an online compendium of Adaptive Microbial Experiments in the Lab.
HTML
1
star
25

GGW-Elm

Elm
1
star
26

yasara-mmligner-plugin

Use the MMLigner structural alignment program from within Yasara!
Python
1
star
27

tomo

Experimental tool for serial section tomography on SECOM
Python
1
star
28

ReproHack-2020

More information & papers for the Reprocubility Hackaton 2020.
1
star
29

chipseq-nextflow

Nextflow
1
star
30

containers-workshop

Materials for the workshop on containers
Python
1
star
31

rdm-introductory-course

1
star
32

herodotus

Your friendly neighbourhood Slack historian (bot).
Clojure
1
star
33

buzz

A real-time quizz and Q&A platform for training
Python
1
star
34

EMRegistration

Java
1
star