Explore @vibbits Open Source projects

VIB Bioinformatics Core (@vibbits)

vibbits

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Global Org. Rank 46,224 (Top 15 %)
Registered about 8 years ago
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Python
18.8 %

HTML
15.6 %

Nextflow 12.5 %

JavaScript
9.4 %

R
9.4 %

Java
6.3 %

TypeScript
3.1 %

Perl
3.1 %

Clojure
3.1 %

PureScript 3.1 %

Dockerfile
3.1 %

SCSS 3.1 %

Jupyter Notebook
3.1 %

Elm
3.1 %

PostScript 3.1 %
Location 🇧🇪 Belgium
Country Total Rank 811
Country Ranking

PureScript 1

Nextflow 3

PostScript 4

Elm
21

Clojure
34

Perl
46

SCSS 54

Dockerfile
64

R
73

HTML
84

Jupyter Notebook
208

JavaScript
210

Java
358

Python
602

TypeScript
940

phyd3

Phylogenetic tree viewer based on D3.js

training-material

VIB BITS training material

nextflow-workshop

Nextflow workshop materials March 2023

nis2pyr

Python utility and library for converting Nikon .nd2 files to pyramidal OME TIFF.

sc_read_kallisto_wrapper

wrapper for single cell transcriptomics pipeline with kallisto

EMDenoising

gentle-hands-on-python

Course materials for the 'Gentle hands-on introduction to Python programming'.

Jupyter Notebook

example-bioinformatics-project

Compare and contrast available tools for bioinformatics projects

containers-workflow-hackathon

This is a draft repository for organizing and collecting materials for the containers & workflows course.

rocker_conda_data_integration

Docker container based on rocker/tidyverse with miniconda3 to run various integration tools for Omics

introduction-github

This is a test-repository for the GitHub tutorial.

nextflow-jnj

Course materials for the workflow pipelines (Nextflow) course.

phylio

Read, write, and manipulate phylogenetic trees

rust-node-ci

A docker image optimized for building Rust and Node projects in CI.

Elixir-3DBioInfo-Benchmark-Protein-Interfaces

snpeffect

snpeffect pipeline

vib-css

VIB CSS styling

rnaseq-editing

nf-core based pipeline for prediction of editing events with RDDpred

material-liascript

irdata

iRefIndex data processing library

mec-shiny-apps

nc-shiny-apps

GGW-Elm

yasara-mmligner-plugin

Use the MMLigner structural alignment program from within Yasara!

tomo

Experimental tool for serial section tomography on SECOM

ReproHack-2020

More information & papers for the Reprocubility Hackaton 2020.

CAMEL

The CAMEL platform, an online compendium of Adaptive Microbial Experiments in the Lab.

chipseq-nextflow

containers-workshop

Materials for the workshop on containers

rdm-introductory-course

herodotus

Your friendly neighbourhood Slack historian (bot).

buzz

A real-time quizz and Q&A platform for training

EMRegistration

NextFlow_pipelines

Tricks and tips for designing a NextFlow pipeline

react-2d-molecule

A React component to display molecule structures in a 2D SVG

phyd3-parser-compat

A compatability library implementing PhyloXML parsing from the legacy version of PhyD3.