Laboratory of Variant Analysis Tools (@vatlab)
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vatlab

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Top repositories

1

sos

SoS workflow system for daily data analysis
Python
270
star
2

sos-notebook

Multi-language Jupyter Notebook
CSS
172
star
3

jupyterlab-sos

Jupyterlab extension for SoS Polyglot Notebook and Workflow Engine, allows multiple kernels in one notebook
TypeScript
70
star
4

varianttools

software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis
C
31
star
5

markdown-kernel

A markdown kernel for Jupyter
Python
24
star
6

sos-rmarkdown

A Rmarkdown to SoS Notebook converter
Python
10
star
7

JupyterCon2018

Slides and examples for JupyterCon 2018
HTML
6
star
8

sos-papermill

Batch executor of sos notebooks
Jupyter Notebook
6
star
9

transient-display-data

A JupyterLab extension that displays transient display messages in console window
TypeScript
5
star
10

vat-docs

Documentation for Variant Tools.
HTML
4
star
11

sos-r

SoS extension for R
Python
3
star
12

jnbinder

Repository of Jupyter Notebooks
Dockerfile
3
star
13

SoS-DataBus

A universal data exchanger among scripting languages
2
star
14

sos-matlab

SoS extension for Matlab and Octave
Python
2
star
15

sos-docs

Documentation of SoS
Jupyter Notebook
2
star
16

sos-julia

SoS extension for Julia
Python
1
star
17

sos-pbs

PBS task engine for SoS
Python
1
star
18

sos-scala

SoS language module for Scala
Python
1
star
19

sos-stata

A SoS language module for Stata
Python
1
star
20

sos-python

SoS extension for Python2 and Python3
Python
1
star
21

sos-fsharp

SoS language module for f-sharp
Python
1
star