Marr Lab (@marrlab)
Guthub

marrlab

Twitter logo Share LinkedIn logo Share Facebook logo Share

Top repositories

1

BaSiC

A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images
MATLAB
46
star
2

InstantDL

InstantDL: An easy and convenient deep learning pipeline for image segmentation and classification
Python
40
star
3

DomainLab

modular domain generalization: https://pypi.org/project/domainlab/
Python
40
star
4

SHAPR_torch

SHAPR: Code for "Capturing Shape Information with Multi-Scale Topological Loss Terms for 3D Reconstruction"
Python
30
star
5

DISPR

A Diffusion Model Predicts 3D Shapes from 2D Microscopy Images
Python
26
star
6

HematoFatePrediction

Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4182
MATLAB
20
star
7

Med-AL-SSL

Repository for implementation of active learning and semi-supervised learning algorithms and applying them to medical imaging datasets
Python
16
star
8

SHAPR

SHAPR - An AI approach to predict 3D cell shapes from 2D microscopic images
Python
12
star
9

CAR_T_TargetIdentification

Computational identification of targets for CAR-T cell therapy in AML
Jupyter Notebook
12
star
10

HistoGPT

Generating highly accurate pathology reports from gigapixel whole slide images with HistoGPT
Jupyter Notebook
9
star
11

DinoBloom

Blood Cell Foundation Model based on DINOv2
Python
7
star
12

scifAI

scifAI: An explainable AI python framework for the analysis of multi-channel imaging data
Python
6
star
13

ClassificationALL

Accurate classification of blood cells in a small acute lymphoblastic leukemia dataset using convolutional neural networks
Python
5
star
14

Anomaly-aware-MIL

A simple pooling method for multiple instance learning based on attention and anomaly scores of instances.
Python
5
star
15

SCEMILA

Single cell based explainable multiple instance learning algorithm (SCEMILA) for genetic acute myeloid leukemia subtype classification.
Python
4
star
16

AE-CFE

Python
3
star
17

attMIL

Attention Based Multiple Instance Learning (attMIL)
Python
3
star
18

BatchDetect

BatchDetect: a python package for detect systematic batch effects in datasets
Python
2
star
19

RedTell

Python
2
star
20

percollFFT

Python
1
star
21

Gal1repression

Modeling Gal1 repression kinetics in single budding yeast cells
MATLAB
1
star
22

HematopoiesisModelComparison

comparison of different lineage hierarchy models describing hematopoiesis
Jupyter Notebook
1
star
23

Bright2Nuc

Preprint: https://www.biorxiv.org/content/10.1101/2022.08.30.505835v1.full.pdf
Python
1
star
24

NeurogenesisAnalysis

Pre-anaylsis, neurogenesis model implementation, parameter inference procedure, model averaging, model evaluation and prediction
C
1
star