Galaxy Project (@galaxyproject)

Top repositories

1

galaxy

Data intensive science for everyone.
Python
1,381
star
2

training-material

A collection of Galaxy-related training material
HTML
306
star
3

tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission
HTML
160
star
4

SARS-CoV-2

Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures
Jupyter Notebook
128
star
5

ansible-postgresql

An Ansible role for managing a PostgreSQL server
Python
115
star
6

galaxy-hub

Galaxy Community Hub
HTML
99
star
7

planemo

Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.
Python
85
star
8

bioblend

A Python library for interacting with the Galaxy API
Python
83
star
9

ansible-slurm

Ansible role for installing and managing the Slurm Workload Manager
Jinja
72
star
10

admin-training

Galaxy Admin Training
HCL
60
star
11

ansible-galaxy

An Ansible role for managing a Galaxy server
Jinja
57
star
12

cloudlaunch

Easily launch cloud applications.
Python
42
star
13

galaxy-helm

Minimal setup required to run Galaxy under Kubernetes
Python
41
star
14

pulsar

Distributed job execution application built for Galaxy
Python
38
star
15

cloudman

Easily create and manage compute clusters on any Cloud.
Python
37
star
16

tools-devteam

Contains a set of Galaxy Tools mostly written by the Galaxy Team.
Python
36
star
17

usegalaxy-playbook

Ansible Playbook for usegalaxy.org
Shell
31
star
18

iwc

Galaxy Workflows maintained by the Intergalactic Workflow Commission
Python
28
star
19

ephemeris

Library for managing Galaxy plugins - tools, index data, and workflows.
Python
27
star
20

gxadmin

Handy command line utility for Galaxy administrators 🚀
Shell
23
star
21

galaxy-language-server

Galaxy Language Server to help in Galaxy (https://galaxyproject.org/) tool wrappers development.
Python
23
star
22

ansible-common-roles

A collection of simple Ansible roles for common (mostly system) tasks
Python
20
star
23

galaxy-cloudman-playbook

Build components for CloudMan, Galaxy on the Cloud, or Galaxy Server
20
star
24

blend4j

blend4j is a JVM partial reimplementation of the Python library bioblend for interacting with Galaxy, CloudMan, and BioCloudCentral.
Java
16
star
25

ansible-galaxy-tools

An Ansible role for automated installation of tools from a Tool Shed into Galaxy.
Python
14
star
26

gravity

Galaxy process management and system administration tools
Python
13
star
27

total-perspective-vortex

Total Perspective Vortex provides an installable set of dynamic rules for the Galaxy application that can route entities (Tools, Users, Roles) to appropriate job destinations based on a configurable yaml file.
Python
13
star
28

cargo-port

cache packages permanently
Python
12
star
29

galaxy-lib

Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library.
Python
12
star
30

galaxy-beta1

Galaxy Github repository BETA 1. May be destroyed and recreated if post-conversion problems are found (but post-conversion commits on this repo will be reapplied to any recreations). Scary disclaimer aside, so far so good! Full details:
Python
12
star
31

awesome-galaxy

Awesome resources related to Galaxy project
11
star
32

infrastructure-playbook

Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/
Jinja
11
star
33

usegalaxy-tools

usegalaxy.* common tools
Shell
11
star
34

ansible-postgresql-objects

A simple Ansible role for managing PostgreSQL objects (users, groups, databases, and privileges).
Jinja
11
star
35

ansible-galaxy-extras

Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.
HTML
11
star
36

ansible-cvmfs

An Ansible role for installing and configuring CernVM-FS (CVMFS)
C
10
star
37

planemo-machine

A packer.io configuration for building out Galaxy (http://galaxyproject.org/) tool development environments.
HTML
10
star
38

idc

Simon's Data Club - Reference data for Galaxy servers
Shell
9
star
39

galaxy-docker-k8s

An Ansible playbook for building a Galaxy container for Kubernetes.
HTML
9
star
40

planemo-monitor

Planemo scripting to monitor repositories and register tool containers.
Shell
9
star
41

gxformat2

Galaxy Workflow Format 2
HTML
9
star
42

ansible-cloudman-image

An Ansible role for building a machine image for CloudMan.
Python
8
star
43

starforge

Build Galaxy dependencies, wheels, and other things, in Docker (and other things)
Python
8
star
44

Galaxy-XSD

Galaxy XML tool wrapper XSD
Shell
8
star
45

cloudlaunch-ui

A user interface for the cloudlaunch app
TypeScript
8
star
46

small-scale-galaxy-admins

8
star
47

ansible-nginx

An Ansible role for managing an nginx server.
Jinja
7
star
48

tiaas2

Reusable Training Infrastructure as a Service
Python
7
star
49

galaxy_codex

Galaxy Communities Dock aka Galaxy Codex: catalog of Galaxy resources (tools, training, workflows)
HTML
7
star
50

galaxy-flavor-testing

Travis scripts to unify and ease the testing of Galaxy favors
Makefile
6
star
51

galaxy-upload

Galaxy Upload Utility for the CLI
Python
6
star
52

planemo-ci-action

Test, deploy, or lint changed Galaxy tools or workflows using Planemo.
Shell
6
star
53

blend4php

A PHP API for interacting with Galaxy
PHP
6
star
54

galaxy-tours

Collection of Galaxy-tours
6
star
55

ansible-galaxy-toolshed

An Ansible role for managing a Galaxy (http://galaxyproject.org) Tool Shed server. For a role to install Galaxy itself, see https://github.com/galaxyproject/ansible-galaxy
HTML
6
star
56

sequence_utils

Galaxy's sequence utilities are a set of Python modules for reading, analyzing, and converting sequence formats.
Python
5
star
57

usage-metering

Scripts and queries for inspecting Galaxy usage data.
Jupyter Notebook
5
star
58

ansible-pulsar

An Ansible role for managing a Pulsar (https://github.com/galaxyproject/pulsar) server.
Jinja
5
star
59

galaxy-tool-repository-template

5
star
60

seek-bzip2

C
5
star
61

ansible-proftpd

Ansible role for installing and configuring ProFTPD for Galaxy
Jinja
5
star
62

wheelforge

Build Python wheels from recipes using cibuildwheel
Python
4
star
63

edam_data

A Python-packaged version of EDAM Ontology Data (http://edamontology.org/)
Python
4
star
64

ansible-interactive-environments

An Ansible role for installing Galaxy Interactive Environments
HTML
4
star
65

ptdk

Webserver for Planemo Training Development Kit
Python
4
star
66

docker-galaxy-requirements

Galaxy requirements for installing Tools from the Tool Shed
Dockerfile
4
star
67

galaxy-maps

3
star
68

dockstore-galaxy-interface

Dockstore Plugin for Galaxy Workflows
Java
3
star
69

cloudauthz

Python
3
star
70

gx-it-proxy

JavaScript
3
star
71

gx-tool-db

An application for managing structured metadata about Galaxy tools.
Python
3
star
72

ansible-miniconda

An Ansible role for managing a Miniconda installation.
3
star
73

ansible-galaxy-os

An Ansible role is for configuring the base operating system useful for running Galaxy.
3
star
74

tpv-shared-database

A shared database of rules for Total Perspective Vortex used by the usegalaxy.* federation.
3
star
75

gxabm

Scripts for automating tasks in Galaxy
Python
2
star
76

starforge-recipes

Build recipes for Galaxy Starforge
Shell
2
star
77

pulsar-helm

Helm charts for Pulsar
Smarty
2
star
78

ansible-mailman3

Ansible role for installing and managing the GNU Mailman 3 suite
Jinja
2
star
79

p4

Proper Prior Planning Prevents Poorly Performed PRs...Probably
Python
2
star
80

conda-iuc

Conda recipes maintained by the Galaxy IUC.
Shell
2
star
81

ansible-opendkim

Ansible role for installing, configuring, and managing OpenDKIM
HTML
2
star
82

jxtx

JavaScript
2
star
83

homebrew-toolshed

Homebrew tap for Tool Shed packages. (Experimental and work in progress).
Ruby
2
star
84

ansible-cloudman-database

An Ansible role for setting up PostgreSQL database for use with Galaxy CloudMan.
2
star
85

hack-the-galaxy-gcc2017

2
star
86

ansible-tiaas2

Ansible role for deploying TIaaS2
HTML
2
star
87

cloudlaunch-registry

An application registry for CloudLaunch
2
star
88

galaxyproject.github.io

Informational repository, highlighting the code offerings of Galaxyproject
HTML
2
star
89

ansible-cloudman-galaxy-setup

This role is used to setup Galaxy for use with CloudMan.
HTML
2
star
90

gxyarchiver

Python
2
star
91

ansible-trackster

An Ansible role for setting up Galaxy Trackster.
2
star
92

galaxy_mentor_network

Galaxy Mentor Network
SCSS
2
star
93

homebrew-tap

A Homebrew (http://brew.sh/) tap for Galaxy (http://galaxyproject.org/) related software.
Ruby
2
star
94

gxy.io

The gxy.io link shortening service
Shell
2
star
95

TIS_methods_review

Jupyter Notebook
1
star
96

galaxy-test-data

Test data files used by Galaxy.
HTML
1
star
97

gsoc

1
star
98

galaxy-merger

Script that automates merging Galaxy.
Shell
1
star
99

galaxytutorial-ismb17

1
star
100

gx-tool-db-project

A project containing database created with the gx-tool-db tool.
Shell
1
star