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galaxyproject/tools-iuc

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160
Rank 234,703 (Top 5 %)
Language
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License
MIT License
Created about 10 years ago
Updated about 2 months ago

galaxyproject/tools-iuc

galaxyproject

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Tool Shed repositories maintained by the Intergalactic Utilities Commission

Galaxy Tools maintained by IUC

This repo contains a subset of Galaxy repositories used in the Tool Shed (https://toolshed.g2.bx.psu.edu/).

These repositories are maintained and developed by the Intergalactic Utilities Commission (Github Org)

Pull Requests with dependencies specified as conda-package will be automatically tested and verified using planemo. If the tests pass and the pull request is merged, the tool will be automatically uploaded to the Test- and Main Tool Shed.

Other repositories with Galaxy tools:

galaxy

Data intensive science for everyone.

training-material

A collection of Galaxy-related training material

SARS-CoV-2

Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures

Jupyter Notebook

ansible-postgresql

An Ansible role for managing a PostgreSQL server

galaxy-hub

Galaxy Community Hub

planemo

Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.

bioblend

A Python library for interacting with the Galaxy API

ansible-slurm

Ansible role for installing and managing the Slurm Workload Manager

admin-training

Galaxy Admin Training

ansible-galaxy

An Ansible role for managing a Galaxy server

cloudlaunch

Easily launch cloud applications.

galaxy-helm

Minimal setup required to run Galaxy under Kubernetes

pulsar

Distributed job execution application built for Galaxy

cloudman

Easily create and manage compute clusters on any Cloud.

tools-devteam

Contains a set of Galaxy Tools mostly written by the Galaxy Team.

usegalaxy-playbook

Ansible Playbook for usegalaxy.org

iwc

Galaxy Workflows maintained by the Intergalactic Workflow Commission

ephemeris

Library for managing Galaxy plugins - tools, index data, and workflows.

gxadmin

Handy command line utility for Galaxy administrators 🚀

galaxy-language-server

Galaxy Language Server to help in Galaxy (https://galaxyproject.org/) tool wrappers development.

ansible-common-roles

A collection of simple Ansible roles for common (mostly system) tasks

galaxy-cloudman-playbook

Build components for CloudMan, Galaxy on the Cloud, or Galaxy Server

blend4j

blend4j is a JVM partial reimplementation of the Python library bioblend for interacting with Galaxy, CloudMan, and BioCloudCentral.

ansible-galaxy-tools

An Ansible role for automated installation of tools from a Tool Shed into Galaxy.

gravity

Galaxy process management and system administration tools

total-perspective-vortex

Total Perspective Vortex provides an installable set of dynamic rules for the Galaxy application that can route entities (Tools, Users, Roles) to appropriate job destinations based on a configurable yaml file.

cargo-port

cache packages permanently

galaxy-lib

Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library.

galaxy-beta1

Galaxy Github repository BETA 1. May be destroyed and recreated if post-conversion problems are found (but post-conversion commits on this repo will be reapplied to any recreations). Scary disclaimer aside, so far so good! Full details:

awesome-galaxy

Awesome resources related to Galaxy project

infrastructure-playbook

Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/

usegalaxy-tools

usegalaxy.* common tools

ansible-postgresql-objects

A simple Ansible role for managing PostgreSQL objects (users, groups, databases, and privileges).

ansible-galaxy-extras

Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.

ansible-cvmfs

An Ansible role for installing and configuring CernVM-FS (CVMFS)

planemo-machine

A packer.io configuration for building out Galaxy (http://galaxyproject.org/) tool development environments.

idc

Simon's Data Club - Reference data for Galaxy servers

galaxy-docker-k8s

An Ansible playbook for building a Galaxy container for Kubernetes.

planemo-monitor

Planemo scripting to monitor repositories and register tool containers.

gxformat2

Galaxy Workflow Format 2

ansible-cloudman-image

An Ansible role for building a machine image for CloudMan.

starforge

Build Galaxy dependencies, wheels, and other things, in Docker (and other things)

Galaxy-XSD

Galaxy XML tool wrapper XSD

cloudlaunch-ui

A user interface for the cloudlaunch app

small-scale-galaxy-admins

ansible-nginx

An Ansible role for managing an nginx server.

tiaas2

Reusable Training Infrastructure as a Service

galaxy_codex

Galaxy Communities Dock aka Galaxy Codex: catalog of Galaxy resources (tools, training, workflows)

galaxy-flavor-testing

Travis scripts to unify and ease the testing of Galaxy favors

galaxy-upload

Galaxy Upload Utility for the CLI

planemo-ci-action

Test, deploy, or lint changed Galaxy tools or workflows using Planemo.

blend4php

A PHP API for interacting with Galaxy

galaxy-tours

Collection of Galaxy-tours

ansible-galaxy-toolshed

An Ansible role for managing a Galaxy (http://galaxyproject.org) Tool Shed server. For a role to install Galaxy itself, see https://github.com/galaxyproject/ansible-galaxy

sequence_utils

Galaxy's sequence utilities are a set of Python modules for reading, analyzing, and converting sequence formats.

usage-metering

Scripts and queries for inspecting Galaxy usage data.

Jupyter Notebook

ansible-pulsar

An Ansible role for managing a Pulsar (https://github.com/galaxyproject/pulsar) server.

galaxy-tool-repository-template

seek-bzip2

ansible-proftpd

Ansible role for installing and configuring ProFTPD for Galaxy

wheelforge

Build Python wheels from recipes using cibuildwheel

edam_data

A Python-packaged version of EDAM Ontology Data (http://edamontology.org/)

ansible-interactive-environments

An Ansible role for installing Galaxy Interactive Environments

ptdk

Webserver for Planemo Training Development Kit

docker-galaxy-requirements

Galaxy requirements for installing Tools from the Tool Shed

galaxy-maps

dockstore-galaxy-interface

Dockstore Plugin for Galaxy Workflows

cloudauthz

gx-it-proxy

gx-tool-db

An application for managing structured metadata about Galaxy tools.

ansible-miniconda

An Ansible role for managing a Miniconda installation.

ansible-galaxy-os

An Ansible role is for configuring the base operating system useful for running Galaxy.

tpv-shared-database

A shared database of rules for Total Perspective Vortex used by the usegalaxy.* federation.

gxabm

Scripts for automating tasks in Galaxy

starforge-recipes

Build recipes for Galaxy Starforge

pulsar-helm

Helm charts for Pulsar

ansible-mailman3

Ansible role for installing and managing the GNU Mailman 3 suite

p4

Proper Prior Planning Prevents Poorly Performed PRs...Probably

conda-iuc

Conda recipes maintained by the Galaxy IUC.

ansible-opendkim

Ansible role for installing, configuring, and managing OpenDKIM

jxtx

homebrew-toolshed

Homebrew tap for Tool Shed packages. (Experimental and work in progress).

ansible-cloudman-database

An Ansible role for setting up PostgreSQL database for use with Galaxy CloudMan.

hack-the-galaxy-gcc2017

ansible-tiaas2

Ansible role for deploying TIaaS2

cloudlaunch-registry

An application registry for CloudLaunch

galaxyproject.github.io

Informational repository, highlighting the code offerings of Galaxyproject

ansible-cloudman-galaxy-setup

This role is used to setup Galaxy for use with CloudMan.

gxyarchiver

ansible-trackster

An Ansible role for setting up Galaxy Trackster.

galaxy_mentor_network

Galaxy Mentor Network

homebrew-tap

A Homebrew (http://brew.sh/) tap for Galaxy (http://galaxyproject.org/) related software.

gxy.io

The gxy.io link shortening service

TIS_methods_review

Jupyter Notebook

galaxy-test-data

Test data files used by Galaxy.

gsoc

galaxy-merger

Script that automates merging Galaxy.

galaxytutorial-ismb17

gx-tool-db-project

A project containing database created with the gx-tool-db tool.

alignment-pipeline