Computational RNA Biology group (@comprna)
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comprna

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Top repositories

1

SUPPA

SUPPA: Fast quantification of splicing and differential splicing
Python
252
star
2

METEORE

Automatic DNA methylation detection from nanopore tools and their consensus model
R
72
star
3

RATTLE

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
C++
56
star
4

CHEUI

Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
C++
32
star
5

MoSEA

Motif Scan and Enrichment Analysis (MoSEA)
Python
16
star
6

ORQAS

ORF Quantification pipeline for Alternative Splicing
Python
14
star
7

ISOTOPE

ISOform-guided prediction of epiTOPEs in cancer
Python
13
star
8

R2Dtool

Analyse RNA feature distributions.
Jupyter Notebook
11
star
9

radian

Nanopore direct RNA basecaller
Python
11
star
10

riser

Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing
Python
11
star
11

reorientexpress

Transcriptome long-read orientation with Deep Learning
Python
9
star
12

Junckey

Collection of scripts for computing PSI of junction clusters
Python
6
star
13

MIRA

Mutation Identification for RNA Alterations
Python
6
star
14

ePydoor

Epitope discovery pipeline for RNA-seq
Python
6
star
15

SUPPA_supplementary_data

Supplementary data
R
5
star
16

LatentEvents

Latent Dirichlet Allocation on alternative splicing events.
Python
5
star
17

CREOLE

Reference-free identification of open reading frames and encoded proteins from nanopore transcriptomic long reads
Python
2
star
18

humming

Tools for the comparison of long-read mappings to a genome reference and annotations
Perl
2
star
19

Splicing_Browser

Browser to present splicing events and junctions arround the genome
R
2
star
20

SeRPeNT

C
1
star
21

IG_Calculator

Set of scripts for obtaining Infomration Gain values from a set of features
Java
1
star
22

CHEUI-public

Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
1
star
23

SeRPeNT-analysis

Perl
1
star
24

FLIPPER

Read orientation and full transcript detection from Nanopore cDNA/RNA sequencing
C++
1
star