comprna/FLIPPER comprna/FLIPPER

  • Stars
    star
    1
  • Language
    C++
  • License
    GNU General Publi...
  • Created about 6 years ago
  • Updated about 6 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
comprna/FLIPPER
github

comprna

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Read orientation and full transcript detection from Nanopore cDNA/RNA sequencing

More Repositories

1

SUPPA

SUPPA: Fast quantification of splicing and differential splicing
Python
252
star
2

METEORE

Automatic DNA methylation detection from nanopore tools and their consensus model
R
72
star
3

RATTLE

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
C++
56
star
4

CHEUI

Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
C++
32
star
5

MoSEA

Motif Scan and Enrichment Analysis (MoSEA)
Python
16
star
6

ORQAS

ORF Quantification pipeline for Alternative Splicing
Python
14
star
7

ISOTOPE

ISOform-guided prediction of epiTOPEs in cancer
Python
13
star
8

R2Dtool

Analyse RNA feature distributions.
Jupyter Notebook
11
star
9

radian

Nanopore direct RNA basecaller
Python
10
star
10

riser

Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing
Python
10
star
11

reorientexpress

Transcriptome long-read orientation with Deep Learning
Python
9
star
12

Junckey

Collection of scripts for computing PSI of junction clusters
Python
6
star
13

MIRA

Mutation Identification for RNA Alterations
Python
6
star
14

ePydoor

Epitope discovery pipeline for RNA-seq
Python
6
star
15

SUPPA_supplementary_data

Supplementary data
R
5
star
16

LatentEvents

Latent Dirichlet Allocation on alternative splicing events.
Python
5
star
17

CREOLE

Reference-free identification of open reading frames and encoded proteins from nanopore transcriptomic long reads
Python
2
star
18

humming

Tools for the comparison of long-read mappings to a genome reference and annotations
Perl
2
star
19

Splicing_Browser

Browser to present splicing events and junctions arround the genome
R
2
star
20

SeRPeNT

C
1
star
21

IG_Calculator

Set of scripts for obtaining Infomration Gain values from a set of features
Java
1
star
22

CHEUI-public

Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
1
star
23

SeRPeNT-analysis

Perl
1
star