Explore @compbiocore Open Source projects

Computational Biology Core (@compbiocore)

compbiocore

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134
Global Org. Rank 50,006 (Top 16 %)
Registered over 8 years ago
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22.2 %

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16.7 %

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16.7 %

Julia
11.1 %

Vue 5.6 %

TeX
5.6 %

HTML
5.6 %

C++
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R
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Location 🇺🇸 United States
Country Total Rank 39,938
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Julia
129

TeX
2,092

Dockerfile
2,293

CSS
4,925

Vue 6,018

VariantVisualization.jl

Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:

bioconductor-workshop-1

cbc-documentation-templates

Repository for documentation templates.

refchef

YAML-based genomics reference management.

bioflows

Bioflows is an easy to use package for running bioinformatics workflows.

metagenomics-power-analyses-tutorial

Tutorial for doing power analyses for metagenomics.

RSeqAn

SeqAn headers for R

nmrdock

NMR docker image dockerfile

bioconductor-workshop-2

BioCookbook.jl

A collection of Julia scripts for bioinformatics in use by CBC

rnaseq_workshop_2021

RNAseq workshop 2021

Jupyter Notebook

deseq-workshop-1

qcviz-nuxt

QC Visualization App - Built with Nuxt.js

qckitfastq

Quality Control toolkit for FASTQ files

single-cell-workshop

Materials for Brown CBC's single-cell analysis workshop

deseq-workshop-2

genome-stats-tools

Uses biopython to pull sequences from ncbi

r-workshop-1

Intro to R workshop

Jupyter Notebook

qckit

Website for qckit, R packages for quality control of genomic sequencing data

compbiocore.github.io

DEseq_workshop_2_2021

Jupyter Notebook

poweranalyses

A collection of power analyses done for different sequencing experiments

jupyterfleet

Cohesive utility to deploy and configure a group of AWS instances running Jupyter for teaching