compbiocore/BioCookbook.jl

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Julia
License
MIT License
Created over 5 years ago
Updated about 4 years ago

compbiocore/BioCookbook.jl

compbiocore

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A collection of Julia scripts for bioinformatics in use by CBC

VariantVisualization.jl

Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:

bioconductor-workshop-1

cbc-documentation-templates

Repository for documentation templates.

refchef

YAML-based genomics reference management.

bioflows

Bioflows is an easy to use package for running bioinformatics workflows.

metagenomics-power-analyses-tutorial

Tutorial for doing power analyses for metagenomics.

RSeqAn

SeqAn headers for R

nmrdock

NMR docker image dockerfile

bioconductor-workshop-2

rnaseq_workshop_2021

RNAseq workshop 2021

Jupyter Notebook

deseq-workshop-1

qcviz-nuxt

QC Visualization App - Built with Nuxt.js

qckitfastq

Quality Control toolkit for FASTQ files

single-cell-workshop

Materials for Brown CBC's single-cell analysis workshop

deseq-workshop-2

genome-stats-tools

Uses biopython to pull sequences from ncbi

r-workshop-1

Intro to R workshop

Jupyter Notebook

qckit

Website for qckit, R packages for quality control of genomic sequencing data

compbiocore.github.io

DEseq_workshop_2_2021

Jupyter Notebook

poweranalyses

A collection of power analyses done for different sequencing experiments

jupyterfleet

Cohesive utility to deploy and configure a group of AWS instances running Jupyter for teaching