sorbet-rails
A set of tools to make the Sorbet typechecker work with Ruby on Rails seamlessly.cellxgene
An interactive explorer for single-cell transcriptomics dataczi-prosemirror
Rich Text Editor built with React and ProseMirrorfogg
Manage Infrastructure as Code with less pain.shasta
[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore readsMedMentions
A corpus of Biomedical papers annotated with mentions of UMLS entities.miniwdl
Workflow Description Language developer tools & local runnercellxgene-census
CZ CELLxGENE Discover Censusczid-web
Infectious Disease Sequencing Platformsoftware-mentions
single-cell-data-portal
The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.cztack
The CZI infrastructure stack.blessclient
Go client to negotiate SSH certificatesaxe-storybook-testing
Command line interface for testing Storybook stories for accessibility.napari-hub
Discover, install, and share napari pluginsChemDisGene
Bio relation extraction labeled datasets3parcp
Faster than s3cpsingle-cell-curation
Code and documentation for the curation of cellxgene datasetsczid-workflows
Portable WDL workflows for CZ ID production pipelinesredis-memo
A Redis-based version addressable caching system. Memoize pure functions, aggregated database queries, and 3rd party API calls.redcord
A Ruby ORM like Active Record, but for Redis.idseq-workflows
Portable WDL workflows for IDseq production pipelinestaxoniq
Taxon Information Query - fast, offline querying of NCBI Taxonomy and related datasorbet-coerce
A type coercion lib works with Sorbet's static type checker and type definitionsExpressionMatrix2
Software for exploration of gene expression data from single-cell RNA sequencing.edu-design-system
Design system for Education Projectschalice-app-template
An AWS Lambda serverless app template with Terraform deployment managementczid-dag
Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.sci-components
2021 Science Design System Component LibraryscRNA-python-workshop
All the action is on the course webpage -->alhazen
AI agents + toolkits for scientific knowledgeczid-cli
CZID (formerly IDseq) infectious disease command-line interfacesoftware-impact-hackathon-2023
A collection of projects by participants in CZI's hackathon "Mapping the Impact of Research Software in Science" (October 2023)happy
Happy Path Deployment Toolcellxgene-documentation
Documentation for the cellxgene productaws-oidc
AWS OIDC Federationcryoet-data-portal
CryoET Data Portalrotator
Rotator is a tool for rotating credentials on a regular schedule.czid-dedup
deduplicate FASTA and FASTQ filesczgenepi
terraform-provider-bless
Terraform provider to automate the creation of BLESS deploymentsscEvalsJam
czi-oss-training
Training Materials for Good Open Source Citizenships3mi
Transfer big files fast between S3 and EC2. Pronounced "semi".single-cell-explorer
Hosted version of cellxgenenapari-plugin-alfa-cohort
Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaborationpyrepl
JS/Python execution bridgesoftware-mention-extraction
Software mention extraction and linking from scientific articlesnapari-cryoet-data-portal
A napari plugin to list, preview, and open data from the CZ Imaging Institute's CryoET Data Portalprometheus-demo
Simulates monitoring HTTP microservice and short-lived job metricsruby-prof-speedscope
A ruby-prof printer for the speedscope.app trace viewer.galago
Interpretation aids for genomic epidemiologygo-misc
miscellaneous go codescoreboard
minimalist web app for comparing algorithm performance on benchmark dataidseq-cli
IDseq infectious disease command-line interfaceopen-science
curated links and customized materials to support biomedical researchers in implementing open science approachesswipe
SFN-WDL infrastructure for pipeline execution - a template repository and Terraform module for SFN-WDL based projectsidseq-bench
IDseq infectious disease benchmarking toolsnapari-hub-collections
DEPRECATED: collections of plugins for the napari hubbff
Breaking, Feature, Fix - a tool for managing semantic versioninggs
A small, user-friendly Google Cloud Storage CLI clientontology-ui
Ontology visualizerfrontend-libs
Monorepo of TypeScript projects for the Chan Zuckerberg Initiative.miniwdl-plugins
MiniWDL pluginsconcept_discovery
spatial-warehouse
Investigation into spatial data and data schemadocs-editor
rich text editor for education purpose.reaper
DRSM-corpus
An annotated literature corpus for NLP studies of 'Disease Research State' based on different categories of research.full-text-mining-ner
Open Source Code for Extraction of Methods and Datasets from Biomedical Papersgithub-actions
A collection of re-usable GitHub Actionssingle-cell
A collection of documents that reflect various design decisions that have been made for the cellxgene project.nbconvert-service
A very light API wrapper around nbconvertnapari-hub-cli
This is a CLI for the napari hubczid-platformics
wdl-cell-ranger
Run Cell Ranger pipelines using WDL and Cromwellcellxgene-compbio-methods
shasta-docs
[DEPRECATED] Shasta github.io repo for user guides, etc.napari-segmentation-workshop
workshop materials for performing cell segmentation in naparicellxgene-ontology-guide
napari.dev
homebrew-tap
chained-aws-lambda
ncbi-tool-cliclient
CLI client for NCBI data toolncbi-tool-sync
Sync component for NCBI data toolczecs
CLI deployment tool for AWS Elastic Container ServiceczLandscapingTk
Landscaping analysis tools for publicly available scientific knowledge sources.scatter-demo
demo scatter plot using webgl and reglgo-kmsauth
Port kmsauth to gosafe_type
Type Coercion & Type Enhancementawesome-data-insights-projects
platformics
Codegen Python GraphQL Entity Frameworkminiwdl-viz
A library to decompose WDL files into a JSON/YAML, and create a mermaid flowchartshasta-docker
[DEPRECATED] This repository contains the code and configuration required to create Docker images for Shasta on different platforms.mini-ete3-js
npm package for basic phylogenetics functionality in the browsercellxgene-manuscript-2023
Code and data to reproduce analyses in the 2023 cellxgene manuscriptCZ-PR-bot
A Github bot for streamlined PR reviewsncbi-tool-search
Collection of script-style utility functions for the NT/NR search mapping research.crc-squared
light speed crc32c checksumsgo-travis-wait
A better wrapper for travis_waitLove Open Source and this site? Check out how you can help us