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Dr. Beiko's Lab (@beiko-lab)

beiko-lab

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Location 🇨🇦 Canada
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gengis

GenGIS (pronounced 'Genghis' like Genghis Khan) is a bioinformatics application that allows users to combine digital map data with information about biological sequences collected from the environment. GenGIS provides a 3D graphical interface in which the user can navigate and explore the data, as well as a Python interface that allows easy scripting of statistical analyses using the Rpy libraries.

mimb_16S

Repository containing scripts and files for 16S gene community analysis chapter in Methods in Molecular Biology

arete

AMR/VF LGT focused bacterial genomics analysis workflow

ananke

Ananke: Clustering marker gene data by time-series patterns

AMRtime

Tool to predict the presence of antimicrobial resistance in clinical metagenomes

MEGASAT

High-throughput analysis of targeted microsatellite sequences.

RADProc

sarand_fullVersion

To extract AMR genes and their neighborhood

2020-BioinformaticsAlgorithms

Tutorial assignments for CSCI4181/CSCI6802 (2020 edition)

Jupyter Notebook

CBW2021_Module2_16S_Analysis

q2-extractor

A small utility that maintains functions to pry data out of QIIME artifact and visualization files and transform as needed.

sarand

To extract AMR genes and their neighborhood

ananke-ui

Shiny-based interface for exploring Ananke results.

CBWMeta2015

Support files for Canadian Bioinformatics Workshop, Metagenomics session 2015