beiko-lab/sarand beiko-lab/sarand

  • Stars
    star
    1
  • Language
    Python
  • License
    GNU General Publi...
  • Created over 2 years ago
  • Updated about 1 year ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
beiko-lab/sarand
github

beiko-lab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

To extract AMR genes and their neighborhood

More Repositories

1

gengis

GenGIS (pronounced 'Genghis' like Genghis Khan) is a bioinformatics application that allows users to combine digital map data with information about biological sequences collected from the environment. GenGIS provides a 3D graphical interface in which the user can navigate and explore the data, as well as a Python interface that allows easy scripting of statistical analyses using the Rpy libraries.
C++
27
star
2

mimb_16S

Repository containing scripts and files for 16S gene community analysis chapter in Methods in Molecular Biology
Shell
25
star
3

arete

AMR/VF LGT focused bacterial genomics analysis workflow
Python
16
star
4

ananke

Ananke: Clustering marker gene data by time-series patterns
Python
9
star
5

AMRtime

Tool to predict the presence of antimicrobial resistance in clinical metagenomes
Python
8
star
6

MEGASAT

High-throughput analysis of targeted microsatellite sequences.
Perl
4
star
7

RADProc

Roff
3
star
8

sarand_fullVersion

To extract AMR genes and their neighborhood
Python
3
star
9

2020-BioinformaticsAlgorithms

Tutorial assignments for CSCI4181/CSCI6802 (2020 edition)
Jupyter Notebook
2
star
10

CBW2021_Module2_16S_Analysis

Shell
2
star
11

q2-extractor

A small utility that maintains functions to pry data out of QIIME artifact and visualization files and transform as needed.
Python
1
star
12

ananke-ui

Shiny-based interface for exploring Ananke results.
R
1
star
13

CBWMeta2015

Support files for Canadian Bioinformatics Workshop, Metagenomics session 2015
Shell
1
star