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@TrinityCTAT

TrinityCTAT

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Trinity_CTAT

ctat-mutations

Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19

CTAT-VirusIntegrationFinder

CTAT-LR-fusion

fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector

ctat-genome-lib-builder

Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components

CTAT-SPLICING

detection of cancer splicing aberrations

mutations

calling variants from RNA-Seq data

ctat-mutations-pVACseq

CTAT-pVACseq

ctat_mutation_ext_testdata

extended testing data for ctat mutations pipe

ctat-mutations-benchmarking

benchmarking utilities for ctat-mutations