Shiu Lab (@ShiuLab)
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ShiuLab

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Top repositories

1

PseudogenePipeline

Python
31
star
2

Manuscript_Code

Repository for code used for publications
Python
26
star
3

ML-Pipeline

A Semi-Automated Machine Learning Pipeline. Developed by the Shiu Lab. Implemented using SciKit-Learn
Python
18
star
4

ML_workshop

Machine learning workshop materials
Jupyter Notebook
14
star
5

RNAseq_pipeline

Python
6
star
6

Gene_coexpression_scripts

R
4
star
7

GO-term-enrichment

Python
4
star
8

Utilities

Scripts useful for manipulation and basic analysis of common file types
Python
3
star
9

GenomicSelection

R
2
star
10

MotifDiscovery-legacy-

Lab scripts to find and analyze pCREs.
Tcl
1
star
11

Pathway_gene_prediction_in_tomato

Python
1
star
12

Evaluating-misassembly

Factors influencing and machine learning models predicting read coverage in a genome assembled using short reads
Python
1
star
13

SM-gene_prediction_Slycopersicum

This repository will have all scripts and/or links to pipelines used for the SM gene prediction in S. lycopersicum paper
Python
1
star