Explore @MannLabs Open Source projects

Mann Labs (@MannLabs)

MannLabs

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Registered almost 6 years ago
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75.0 %

Python
15.6 %

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Rust
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Shell
3.1 %

CKG

Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph

Jupyter Notebook

alphapept

A modular, python-based framework for mass spectrometry. Powered by nbdev.

alphapeptdeep

Deep learning framework for proteomics

Jupyter Notebook

alphatims

An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.

alphamap

An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

Jupyter Notebook

ProteomicsVisualization

This is a collection of minimal code to visualize various aspects of proteomics data.

Jupyter Notebook

alphapeptstats

Python Package for the downstream analysis of mass-spectrometry-based proteomics data

Jupyter Notebook

alphadia

modular & open DIA search

Jupyter Notebook

directlfq

Fast and accurate label-free quantification for small and very large numbers of proteomes

Jupyter Notebook

alphaviz

AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquired with Bruker instrument.

alphabase

Infrastructure of AlphaX ecosystem

Jupyter Notebook

structuremap

Python package for investigating the structural context of PTMs

Jupyter Notebook

scPortrait

Jupyter Notebook

timsrust

pydiaid

An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Institute of Biochemistry.

Jupyter Notebook

alpharaw

An open-source Python package to unify raw MS data accession and storage.

Jupyter Notebook

PeptDeep-HLA

DL model to predict HLA peptide presentation

Jupyter Notebook

proteomesoflife

python based queries for the proteomesoflife neo4j network database

DeepCollisionalCrossSection

Jupyter Notebook

structuremap_analysis

Analysis workflow for investigating the structural context of PTMs

Jupyter Notebook

SPARCSpy

Jupyter Notebook

single-cell-DVP

Jupyter Notebook

py-lmd

Jupyter Notebook

SPARCStools

python tools to perform data parsing and image stitching on microscopy data

Jupyter Notebook

DeepScore

The DeepScore Repository for the EuBIC 2023 Hackathon

Jupyter Notebook

refquant

Reference-channel based quantification for mDIA data

Jupyter Notebook

alphasynchro

timspeak

ReactomeGSApython

Python interface to Reactome's gene set enrichment analysis service

Jupyter Notebook

SPARCS_pub_figures

Notebook and data to recreate figures from SPARCS manuscript

Jupyter Notebook

slurm_scripts

MitoPhos

MitoPhos data analysis notebooks

Jupyter Notebook