John Innes Centre (@JIC-CSB)
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JIC-CSB

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Top repositories

1

kilombo

Kilobot simulator in C
C
43
star
2

SLURM-cheat-sheet

Cheat sheet for interacting with the SLURM scheulder
17
star
3

FISHcount

Software for counting single RNA molecules using analysis of FISH data
Python
8
star
4

intro_to_image_analysis_with_python

A short introduction to analysing 3D microscopy images with Python.
Jupyter Notebook
4
star
5

dtoolai

Dtool AI reproducible AI library
Python
3
star
6

omero-ansible

Ansible scripts for installing and configuring an OMERO server.
Shell
3
star
7

jicbioimage

Tool for automated and reproducible bioimage analysis
Python
3
star
8

data-analysis-project

A data analysis project template
3
star
9

scientific-linux

Provisioning of core scientific software into a Linux VM.
2
star
10

slurmtools

Tools to make working with SLURM easier
Python
2
star
11

jicirodsmanager

Python tools to manage users/groups/quotas/namespaces in an iRODS zone
Python
2
star
12

eye

Simple cross-platform command line image viewer
Python
2
star
13

micro-blast-webservice

Demo Blast web service/application.
Python
1
star
14

jicbioimage.transform

Tool for automated and reproducible bioimage analysis
Python
1
star
15

gaussproj

Code for a modified maximum intensity projection of confocal image data
Python
1
star
16

babar

Bayesian Bacterial Growth Curve Analysis in R
R
1
star
17

jicbioimage.core

Tool for automated and reproducible bioimage analysis
Python
1
star
18

Boleracea-AssociativeTranscriptomics

R
1
star
19

wheat-leaf-segmentation

Segement wheat leaves and measure cell lengths.
Python
1
star
20

jicagile

Lightweight command line tool for agile project management
Python
1
star