JIC-CSB/data-analysis-project

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JIC-CSB/data-analysis-project

JIC-CSB

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A data analysis project template

kilombo

Kilobot simulator in C

SLURM-cheat-sheet

Cheat sheet for interacting with the SLURM scheulder

FISHcount

Software for counting single RNA molecules using analysis of FISH data

intro_to_image_analysis_with_python

A short introduction to analysing 3D microscopy images with Python.

Jupyter Notebook

dtoolai

Dtool AI reproducible AI library

omero-ansible

Ansible scripts for installing and configuring an OMERO server.

jicbioimage

Tool for automated and reproducible bioimage analysis

scientific-linux

Provisioning of core scientific software into a Linux VM.

slurmtools

Tools to make working with SLURM easier

jicirodsmanager

Python tools to manage users/groups/quotas/namespaces in an iRODS zone

eye

Simple cross-platform command line image viewer

micro-blast-webservice

Demo Blast web service/application.

jicbioimage.transform

Tool for automated and reproducible bioimage analysis

gaussproj

Code for a modified maximum intensity projection of confocal image data

babar

Bayesian Bacterial Growth Curve Analysis in R

jicbioimage.core

Tool for automated and reproducible bioimage analysis

Boleracea-AssociativeTranscriptomics

wheat-leaf-segmentation

Segement wheat leaves and measure cell lengths.

jicagile

Lightweight command line tool for agile project management