Bayer Open Source (@Bayer-Group)

Top repositories

1

cloudformation-template-generator

A type-safe Scala DSL for generating CloudFormation templates
Scala
211
star
2

etcd-aws-cluster

A container to assist in managing a etcd2 cluster from an Amazon auto scaling group
Shell
202
star
3

paquo

PAthological QUpath Obsession - QuPath and Python conversations
Python
100
star
4

tiffslide

TiffSlide - cloud native openslide-python replacement based on tifffile
Python
79
star
5

ol-kit

Easy to use, open source React/Openlayers geospatial component toolkit.
JavaScript
73
star
6

goldengate-kafka-adapter

An adapter for Oracle GoldenGate to push change capture data directly to an Apache Kafka cluster
Java
54
star
7

stax

AWS CloudFormation stack manager
Shell
49
star
8

column-resizer

Adds resizable columns to tables
JavaScript
45
star
9

stoop

Monadic Scala API for CouchDB
Scala
44
star
10

COLID-Documentation

The documentation repository is part of the Corporate Linked Data Catalog - short: COLID - application.
HTML
43
star
11

xsmiles

Visualize atom and non-atom attributions and SMILES strings
TypeScript
41
star
12

kamon-prometheus

A Kamon backend to support Prometheus
HTML
38
star
13

cellenium

Cellenium is a FAIR and scalable interactive visual analytics app for scRNA-Seq data (single-cell RNA sequencing).
Jupyter Notebook
26
star
14

cf-metrics

Shell
22
star
15

sas2r

Clinical trial data analytic recipes in R for SAS users
R
21
star
16

velocity-dashboard

React dashboard component
JavaScript
19
star
17

spray-kamon-metrics

Better Kamon metrics for Spray services
HTML
19
star
18

aws2scala

An idiomatic Scala wrapper of the AWS SDK with both asynchronous and streaming clients.
Scala
19
star
19

BayerCLAW

BayerCLAW workflow orchestration system for AWS
Python
18
star
20

pado

PAthological Data Obsession - cloud native digital pathology datasets
Python
17
star
21

mwundo

GeoJSON object, spray-json formats, and basic Geo/Geometry
Scala
17
star
22

eqgat

Research repository for the proposed equivariant graph attention network that operates on large biomolecules proposed by Le et al. (2022)
Python
17
star
23

docker-min-jessie

Minimally sized Debian Jessie build
17
star
24

COLID-Setup

The setup repository is part of the Corporate Linked Data Catalog - short: COLID - application. It helps setting up a local environment based on Docker Compose.
Shell
15
star
25

pybalance

A library for minimizing the effects of confounding covariates
Jupyter Notebook
13
star
26

solvmate

Python
12
star
27

xsmiles-jupyterlab

A JupyterLab plugin implementing the XSMILES visualization
TypeScript
11
star
28

cf-users

Application to manage users and privileges in Cloud Foundry.
CoffeeScript
9
star
29

mocka

Mocka is a mocking and stubbing package written for the Go programming language.
Go
9
star
30

COLID-Data-Marketplace-Frontend

The Data Marketplace frontend repository is part of the Corporate Linked Data Catalog - short: COLID - application. Users can search for registered resources in COLID. It provides a search bar, aggregation filters and search result displaying including term highlighting.
TypeScript
9
star
31

mlr-xai-selfies

Python
8
star
32

go-workshop

Structured hands-on workshop for learning Go
Go
8
star
33

GeospatialSwift

Geospatial swift framework for GeoJson with geohashing, calculations, and much more
Swift
8
star
34

text-to-sql-epi-ehr-naacl2024

Code for Retrieval augmented text-to-SQL generation for epidemiological question answering using electronic health records
Python
8
star
35

giae

Implementation of the Paper "Unsupervised Learning of Group Invariant and Equivariant Representations" presented at NeurIPS 2022.
Jupyter Notebook
7
star
36

chinese-restaurant-process

Highly optimized Scala implementation of Chinese Restaurant Process based non-parametric Bayesian clustering
Scala
7
star
37

CPMolGAN

HTML
6
star
38

xtars-naacl2022

Zero/few-shot learning for classification with very large label sets and long-tailed distribution of labels in data points
Python
6
star
39

COLID-Editor-Frontend

The editor frontend repository is part of the Corporate Linked Data Catalog - short: COLID - application. It offers user an metadata based user interface to register resources in COLID.
TypeScript
6
star
40

BIC-BReasy

R
6
star
41

MOCCA

Python
6
star
42

Parrot

Parrot is a compile-time Mock Generator for Swift - written completely in Swift. It's geared towards use in Xcode and works for any kind of swift project (e.g. server side, iOS, or command line tools). The mock structure is modeled off of the sinon.js APIs
Swift
6
star
43

simple-spray

Simple Spray Application Demo
Scala
5
star
44

COLID-AppData-Service

The appdata service repository is part of the Corporate Linked Data Catalog - short: COLID - application. It maintains the user data and application settings.
C#
5
star
45

Github-Enterprise-Org-Explorer

CoffeeScript
5
star
46

react-color-a11y

React higher-order component to automatically enforce color accessibility
TypeScript
5
star
47

geostyler-geoserver-sld-parser

GeoStyler-Geoserver-Style-Parser implementation for SLD
TypeScript
5
star
48

passport-ping-oauth2

Ping OAuth 2.0 authentication strategy for Passport.
JavaScript
5
star
49

COLID-Reporting-Service

The reporting service repository is part of the Corporate Linked Data Catalog - short: COLID - application. It offers an API for statistics of registered resources.
C#
5
star
50

xBCF

Predicting BCF values with explanations
Python
5
star
51

COLID-Search-Service

The search service repository is part of the Corporate Linked Data Catalog - short: COLID - application. It makes the data findable and provides indexing and search functionalities based on Elasticsearch.
C#
5
star
52

COLID-Indexing-Crawler-Service

The Indexing Crawler Service (ICS) repository is part of the Corporate Linked Data Catalog - short: COLID - application. It is responsible to extract data from a RDF storage system, transform and enrich the data and finally to send it via a message queue to the DMP Webservice for indexing.
C#
5
star
53

pavo

PAthological Visualization Obsession - visualization playground for pado datasets
Python
5
star
54

prom-cf-sd

Go
4
star
55

GeospatialKit

Geospatial iOS framework for GeoJson with mapping, imaging, and everything from GeospatialSwift
Swift
4
star
56

glass-key

This is a common library which supports Play and Spray communicating as clients and resources for OAuth2.
Scala
4
star
57

open-nucleotides

Deep Learning Models Recognizing Genomic Regulatory Code
Python
4
star
58

fRegGAN

Python
4
star
59

atomic-spinner

Customizable React loading spinner that looks like an atom
TypeScript
4
star
60

express-client-validator

An express middleware to validate route clients
CoffeeScript
4
star
61

COLID-Scheduler-Service

The scheduler service repository is part of the Corporate Linked Data Catalog - short: COLID - application. It sets up recurring jobs for user notifications and analytics.
C#
4
star
62

COLID-Registration-Service

The registration service repository is part of the Corporate Linked Data Catalog - short: COLID - application. It is the central microservice to register resources in the triplestore.
C#
4
star
63

mitochondrial-tox

Supporting information from "Predicting the Mitochondrial Toxicity of Small Molecules: Insights From Mechanistic Assays and Cell Painting Data" by Marina Garcia de Lomana, Paula Andrea Marin Zapata, and Floriane Montanari
Jupyter Notebook
4
star
64

logstash-configs

Logstash config files
3
star
65

BIC-DetectoR

R
3
star
66

python-concentriq

Python
3
star
67

r-cytoscape.js

An HTMLWidgets package for CytoscapeJS which can be used to produce standalone figure or for embedding in Shiny applications.
JavaScript
3
star
68

xtbf

Python
2
star
69

Newick2Network

A Python tool to convert Newick trees to Cytoscape compatible networks
Python
2
star
70

passport-gigya-oauth2

Gigya OAuth 2.0 authentication strategy for Passport.
JavaScript
2
star
71

algebraic-datatypes

Blog companion code
Scala
2
star
72

TimberSwift

A message forwarding framework for sending logs, analytics, performance, network activity, and other messages to the Parent Application
Swift
2
star
73

cdst

cdst
Jupyter Notebook
2
star
74

cf-portal

JavaScript
2
star
75

BIC-AdEPro

R
2
star
76

scenarion

A scenario testing package that helps reveal learned relationships between features and the variables they're meant to predict. Use: 1) Build your classification/regression model using SciKit-Learn, keras, or otherwise, 2) pass your model over to Scenarion for scenario testing and visualization of results.
Jupyter Notebook
2
star
77

KGE-Frontend

TypeScript
1
star
78

WaterBase

R
1
star
79

torch_cddd

Python
1
star
80

VCG-resampling

preparation for moving open source submission https://github.com/bayer-int/bayer-open-source-submissions/issues/31
1
star
81

httpbin

A simple docker container running httpbin
1
star
82

fleet-client

A Scala client for the fleet API
Scala
1
star
83

standards

Standards for contributing to MonsantoCo open source projects
1
star
84

PISA-T

Python
1
star
85

MOCCA-frontend

Python
1
star
86

BadranEtAl2015

Analysis scripts for Badran et al 2015
R
1
star
87

terraform-aws-autoken

🔒 GitHub Action for short lived credentials to access resources in CI/CD
TypeScript
1
star
88

GCDPrjct

R
1
star
89

BIC-subscreen

R
1
star
90

BIC-megaplots

R
1
star