Sarah B. Kingan (@skingan)
github

skingan

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  • Stars
    star
    30
  • Global Rank 490,439 (Top 17 %)
  • Followers 13
  • Following 3
  • Registered about 10 years ago
  • Most used languages
    Python
         40.0 %
    Perl
         40.0 %
    R
         20.0 %
  • Location ๐Ÿ‡บ๐Ÿ‡ธ United States
  • Country Total Rank 94,186
  • Country Ranking
    Perl
         758
    R
         6,763

Top repositories

1

purge_haplotigs_multiBAM

branch of purge haplotigs that inputs multiple bam files
Perl
9
star
2

adapt_PurgeHaplotigs_for_FALCONPhase

Convert output of purge haplotigs to format compatible with FALCON-Phase
Perl
6
star
3

HomolContigsByAnnotation

python script to identify genes that are present on multiple contigs
Python
6
star
4

NCBI_DiploidAssembly

scripts to generate files associated with NCBI submission of diploid genome assembly
Python
3
star
5

CSC162

Collection of python scripts for Data Structures and Algorithms course
Python
1
star
6

FC_Unzip_HaplotypeDivergence

summarize haplotype divergence in unzipped regions
R
1
star
7

CDS2SFS

Calculates site frequency spectra for synonymous and nonsynonymous sites in coding sequence alignment
Perl
1
star
8

sim-low-input

Simulate PacBio Low Input HiFi Reads
Python
1
star
9

score_phase

snakemake tool for scoring haplotype phase in diploid assemblies
R
1
star
10

AaegL5_FinalPolish

data files and scripts used for final polishing of scaffolded, gap-filled assembly
Perl
1
star