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purge_haplotigs_multiBAM
branch of purge haplotigs that inputs multiple bam filesadapt_PurgeHaplotigs_for_FALCONPhase
Convert output of purge haplotigs to format compatible with FALCON-PhaseHomolContigsByAnnotation
python script to identify genes that are present on multiple contigsNCBI_DiploidAssembly
scripts to generate files associated with NCBI submission of diploid genome assemblyCSC162
Collection of python scripts for Data Structures and Algorithms courseFC_Unzip_HaplotypeDivergence
summarize haplotype divergence in unzipped regionsCDS2SFS
Calculates site frequency spectra for synonymous and nonsynonymous sites in coding sequence alignmentsim-low-input
Simulate PacBio Low Input HiFi ReadsAaegL5_FinalPolish
data files and scripts used for final polishing of scaffolded, gap-filled assemblyLove Open Source and this site? Check out how you can help us