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purge_haplotigs_multiBAM
branch of purge haplotigs that inputs multiple bam filesadapt_PurgeHaplotigs_for_FALCONPhase
Convert output of purge haplotigs to format compatible with FALCON-PhaseHomolContigsByAnnotation
python script to identify genes that are present on multiple contigsNCBI_DiploidAssembly
scripts to generate files associated with NCBI submission of diploid genome assemblyCSC162
Collection of python scripts for Data Structures and Algorithms courseCDS2SFS
Calculates site frequency spectra for synonymous and nonsynonymous sites in coding sequence alignmentsim-low-input
Simulate PacBio Low Input HiFi Readsscore_phase
snakemake tool for scoring haplotype phase in diploid assembliesAaegL5_FinalPolish
data files and scripts used for final polishing of scaffolded, gap-filled assemblyLove Open Source and this site? Check out how you can help us